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BaseInfo

ncRNA ID novel_gma_miR24
Species Glycine max
Class miRNA
Genome position Chr9:40266787-40266871 [+]
Reference genome Glycine_max_v2.0
Source SRR1451627;SRR1451640;SRR1451644;SRR1451645;SRR1451648;SRR1451657;SRR1753104;SRR2968974;SRR835758;SRR835759;SRR835763;SRR835768;SRR835770;SRR835771;SRR835772;SRR835773;SRR1295520;SRR1451605;SRR1451613;SRR1451621;SRR1451623;SRR1451626
Length 21
Mature sequence(if miRNA) 65 - CUUCCAUAUCUGGGGAGCUUC - 85
Stem-loop(if miRNA) --    G     C      UC      UU     -  UCAAUA
  AGCU CUUAG UAUGGA  CCACAG  CUACC CA      A
  |||| ||||| ||||||  ||||||  ||||| ||
  UCGA GGGUC AUACCU  GGUGUU  GAUGG GU      G
CU    G     U      UC      CU     U  UUUCGU
Stem-loop sequence AGCUGCUUAGCUAUGGAUCCCACAGUUCUACCCAUCAAUAAGUGCUUUUGUGGUAGUCUUGUGGCUUCCAUAUCUGGGGAGCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014777731.1
ncRNA:21   CUUCGAGGGGUCUAUACCUUC   1
  **||*|||=||||||||||||
targets:1029   UCAGAUCCUCAGAUAUGGAAG   1049

2.5 PREDICTED: Glycine max pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like (LOC100793091), mRNA pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like(LOC100793091) coding protein psRNATarget
XM_014768809.1
ncRNA:21   CUUCGAGGGGUCUAUACCUUC   1
  **||*|||=||||||||||||
targets:1072   UCAGAUCCUCAGAUAUGGAAG   1092

2.5 PREDICTED: Glycine max pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like (LOC100811207), mRNA pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like(LOC100811207) coding protein psRNATarget
XM_003520835.3
ncRNA:21   CUUCGAGGGGUCUAUACCUUC   1
  **||*|||=||||||||||||
targets:1136   UCAGAUCCUCAGAUAUGGAAG   1156

2.5 PREDICTED: Glycine max pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like (LOC100778279), mRNA pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like(LOC100778279) coding protein psRNATarget
XM_003554736.3
ncRNA:21   CUUCGAGGGGUCUAUACCUUC   1
  **||*|||=||||||||||||
targets:1132   UCAGAUCCUCAGAUAUGGAAG   1152

2.5 PREDICTED: Glycine max pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like (LOC100802573), mRNA pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like(LOC100802573) coding protein psRNATarget