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BaseInfo

ncRNA ID novel_gma_miR18
Species Glycine max
Class miRNA
Genome position Chr8:11407799-11407863 [+]
Reference genome Glycine_max_v2.0
Source SRR1451627;SRR1451628;SRR1451629;SRR1451630;SRR1451632;SRR1451633;SRR1451634;SRR1451636;SRR1451638;SRR1451639;SRR1451640;SRR1451643;SRR1451644;SRR1451648;SRR1451649;SRR3160566;SRR3160568;SRR1451607;SRR1451609;SRR1451610;SRR1451611;SRR1451618;SRR1451621;SRR1451626
Length 21
Mature sequence(if miRNA) 45 - UUGUUUCUUAUAAAAAGGACC - 65
Stem-loop(if miRNA) --                      UC    UA
  UCCUUUUUAUAAGAAACAAGUU  AGUG  A
  ||||||||||||||||||||||  ||||  A
  AGGAAAAAUAUUCUUUGUUCAA  UCAC  A
CC                      UA    UU
Stem-loop sequence UCCUUUUUAUAAGAAACAAGUUUCAGUGUAAAAUUCACUAUAACUUGUUUCUUAUAAAAAGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764194.1
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:686   GGUCCUUUUUAUAAGAAACAA   706

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X9, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591237.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:698   GGUCCUUUUUAUAAGAAACAA   718

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X8, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591232.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:723   GGUCCUUUUUAUAAGAAACAA   743

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X3, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591234.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:885   GGUCCUUUUUAUAAGAAACAA   905

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X4, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591233.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:890   GGUCCUUUUUAUAAGAAACAA   910

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X2, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_014764193.1
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:935   GGUCCUUUUUAUAAGAAACAA   955

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X7, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591236.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:946   GGUCCUUUUUAUAAGAAACAA   966

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X5, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_003538317.3
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:967   GGUCCUUUUUAUAAGAAACAA   987

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X1, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591235.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||||||||||||||||||||
targets:979   GGUCCUUUUUAUAAGAAACAA   999

0.0 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X6, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006585351.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  *|||=||||||||||||||||
targets:600   CGUCUUUUUUAUAAGAAACAA   620

1.0 PREDICTED: Glycine max transcription factor JUNGBRUNNEN 1-like (LOC100808692), mRNA transcription factor JUNGBRUNNEN 1-like(LOC100808692) coding protein psRNATarget
XM_006585931.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  *|||=||||||||||||||||
targets:573   UGUCUUUUUUAUAAGAAACAA   593

1.0 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g34110 (LOC102670178), mRNA probable LRR receptor-like serine/threonine-protein kinase At1g34110(LOC102670178) coding protein psRNATarget
XM_003541465.3
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  ||||||*||||||||||||||
targets:1571   GGUCCUAUUUAUAAGAAACAA   1591

1.0 PREDICTED: Glycine max peroxidase 19 (LOC100777463), mRNA peroxidase 19(LOC100777463) coding protein psRNATarget
XM_014779151.1
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  *||*|||||||||||||||||
targets:55   UGUACUUUUUAUAAGAAACAA   75

1.0 PREDICTED: Glycine max transcription factor bHLH25-like (LOC100808003), mRNA transcription factor bHLH25-like(LOC100808003) coding protein psRNATarget
NM_001253040.1
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  **|==||||||||||||||||
targets:974   AUUUUUUUUUAUAAGAAACAA   994

2.0 Glycine max uncharacterized LOC100790588 (LOC100790588), mRNA uncharacterized LOC100790588(LOC100790588) coding protein psRNATarget
BT095506.1
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  **|==||||||||||||||||
targets:974   AUUUUUUUUUAUAAGAAACAA   994

2.0 Soybean clone JCVI-FLGm-25O9 unknown mRNA NA coding protein psRNATarget
XM_003527423.3
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  **|==||||||||||||||||
targets:992   AAUUUUUUUUAUAAGAAACAA   1012

2.0 PREDICTED: Glycine max uncharacterized LOC100781575 (LOC100781575), mRNA uncharacterized LOC100781575(LOC100781575) coding protein psRNATarget
XM_003553882.3
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  |||=||||||||||||||=||
targets:1058   GGUUCUUUUUAUAAGAAAUAA   1078

2.5 PREDICTED: Glycine max peroxidase 55 (LOC100791275), mRNA peroxidase 55(LOC100791275) coding protein psRNATarget
NM_001254404.2
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  *|||=||||||*|||||||||
targets:1058   AGUCUUUUUUACAAGAAACAA   1078

2.5 Glycine max NAC domain-containing protein 42-like (LOC100790471), mRNA NAC domain-containing protein 42-like(LOC100790471) coding protein psRNATarget
BT096898.1
ncRNA:21   CCAGGAAAAAUAUUCUUUGUU   1
  *|||=||||||*|||||||||
targets:1059   AGUCUUUUUUACAAGAAACAA   1079

2.5 Soybean clone JCVI-FLGm-15F10 unknown mRNA NA coding protein psRNATarget
XM_006588672.2
ncRNA:21   CCA-GGAAAAAUAUUCUUUGUU   1
  |||-||||*|||||||||||||
targets:980   GGUUCCUUGUUAUAAGAAACAA   1001

3.0 PREDICTED: Glycine max pathogenesis-related protein PR-1-like (LOC102664509), mRNA pathogenesis-related protein PR-1-like(LOC102664509) coding protein psRNATarget
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