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BaseInfo

ncRNA ID	novel_gma_miR17
Species	Glycine max
Class	miRNA
Genome position	Chr8:28311642-28311719 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451627
Length	20
Mature sequence(if miRNA)	1 - CGCGUGCGGCUGCGGGUGUC - 20
Stem-loop(if miRNA)	--A      C     -   UU UG -    -   U  -  GC    GCUCGU GCCGC CGU  G  C CGGU GCG CG CU  C    |||||| ||||| |||  |  | |||| ||| || ||    UGGGCG CGGCG GCG  C  G GUCG CGC GC GG  A CUG      U     U   -- GU U    G   U  U  AG
Stem-loop sequence	AGCUCGUCGCCGCCGUUUGUGCCGGUGCGUCGCUGCCAGAGGUCGUCGCGGCUGUGUGCGCGUGCGGCUGCGGGUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK244297.1	ncRNA:20   CUGUGGGCGUCGGCGUGCGC   1   |*||||||||||*||||||| targets:2564   GUCACCCGCAGCGGCACGCG   2583 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-K01	NA	coding protein	psRNATarget
XM_014765235.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4617   GACACCCGCAGUCCGCACGCG   4637 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X11, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765229.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4614   GACACCCGCAGUCCGCACGCG   4634 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765228.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4609   GACACCCGCAGUCCGCACGCG   4629 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765226.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4607   GACACCCGCAGUCCGCACGCG   4627 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765227.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4602   GACACCCGCAGUCCGCACGCG   4622 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765243.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4545   GACACCCGCAGUCCGCACGCG   4565 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X26, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765245.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4532   GACACCCGCAGUCCGCACGCG   4552 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X28, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765244.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4522   GACACCCGCAGUCCGCACGCG   4542 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X27, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_006593727.2	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4474   GACACCCGCAGUCCGCACGCG   4494 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X9, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765232.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4400   GACACCCGCAGUCCGCACGCG   4420 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X8, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765230.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4393   GACACCCGCAGUCCGCACGCG   4413 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765231.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4388   GACACCCGCAGUCCGCACGCG   4408 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X7, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765234.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4311   GACACCCGCAGUCCGCACGCG   4331 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X10, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765237.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4260   GACACCCGCAGUCCGCACGCG   4280 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X14, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765239.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4178   GACACCCGCAGUCCGCACGCG   4198 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X18, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765238.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4162   GACACCCGCAGUCCGCACGCG   4182 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X15, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_006593731.2	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4160   GACACCCGCAGUCCGCACGCG   4180 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X13, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_014765236.1	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4155   GACACCCGCAGUCCGCACGCG   4175 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X12, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_006593734.2	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4085   GACACCCGCAGUCCGCACGCG   4105 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X17, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget
XM_003543922.3	ncRNA:20   CUGUGGGCGUC-GGCGUGCGC   1   |||||||||||-||||||||| targets:4078   GACACCCGCAGUCCGCACGCG   4098 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like (LOC100787792), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like(LOC100787792)	coding protein	psRNATarget