Search result

BaseInfo

ncRNA ID	novel_gma_miR15
Species	Glycine max
Class	miRNA
Genome position	Chr8:42076919-42077003 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451627
Length	21
Mature sequence(if miRNA)	1 - AAAAUGUUUAAGGAUUGAAAU - 21
Stem-loop(if miRNA)	--                            A   --     AAU   UUCAGUCCUUAAACAUUUUCAAAGUAUG UGA  AAGUU   C   |||||||||||||||||||||||||||| |||  |||||   AAGUUAGGAAUUUGUAAAAGUUUCGUAU AUU  UUCGG   G UA                            -   AA     GGA
Stem-loop sequence	UUCAGUCCUUAAACAUUUUCAAAGUAUGAUGAAAGUUAAUCGAGGGGCUUAAUUAUAUGCUUUGAAAAUGUUUAAGGAUUGAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014771968.1	ncRNA:21   UAAAGUUAGGAAUUUGUAAAA   1   =*||||*|=|||||||||||| targets:1453   GAUUCACUUCUUAAACAUUUU   1473 Target Full Sequence	2.5	PREDICTED: Glycine max guanylate kinase 2 (LOC100527163), transcript variant X3, mRNA	guanylate kinase 2(LOC100527163)	coding protein	psRNATarget
XM_014771969.1	ncRNA:21   UAAAGUUAGGAAUUUGUAAAA   1   =*||||*|=|||||||||||| targets:1492   GAUUCACUUCUUAAACAUUUU   1512 Target Full Sequence	2.5	PREDICTED: Glycine max guanylate kinase 2 (LOC100527163), transcript variant X4, mRNA	guanylate kinase 2(LOC100527163)	coding protein	psRNATarget
XM_014771966.1	ncRNA:21   UAAAGUUAGGAAUUUGUAAAA   1   =*||||*|=|||||||||||| targets:1527   GAUUCACUUCUUAAACAUUUU   1547 Target Full Sequence	2.5	PREDICTED: Glycine max guanylate kinase 2 (LOC100527163), transcript variant X1, mRNA	guanylate kinase 2(LOC100527163)	coding protein	psRNATarget
XM_014771967.1	ncRNA:21   UAAAGUUAGGAAUUUGUAAAA   1   =*||||*|=|||||||||||| targets:1567   GAUUCACUUCUUAAACAUUUU   1587 Target Full Sequence	2.5	PREDICTED: Glycine max guanylate kinase 2 (LOC100527163), transcript variant X2, mRNA	guanylate kinase 2(LOC100527163)	coding protein	psRNATarget