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BaseInfo

ncRNA ID novel_gma_miR13
Species Glycine max
Class miRNA
Genome position Chr8:47766649-47766732 [+]
Reference genome Glycine_max_v2.0
Source SRR1451627;SRR1451631;SRR1451633;SRR1451635
Length 21
Mature sequence(if miRNA) 1 - UCAGAAUUGGAGUUUCACCUC - 21
Stem-loop(if miRNA) --UC     UG         CUCGG    CU   UU ACCUUU
    AGAAU  GAGUUUCAC     UAAC  GCA  G      A
    |||||  |||||||||     ||||  |||  |      A
    UCUUA  CUUAAAGUG     GUUG  UGU  C      U
CUAA     GU         ---UA    AU   UU CAAGCA
Stem-loop sequence UCAGAAUUGGAGUUUCACCUCGGUAACCUGCAUUGACCUUUAAUACGAACCUUUGUUAGUUGAUGUGAAAUUCUGAUUCUAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001248387.1
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  ||*||||||||||||||||||
targets:461   GAAGUGAAACUCCAAUUCUGA   481

1.0 Glycine max uncharacterized LOC100305944 (LOC100305944), mRNA uncharacterized LOC100305944(LOC100305944) coding protein psRNATarget
BT089796.1
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  ||*||||||||||||||||||
targets:461   GAAGUGAAACUCCAAUUCUGA   481

1.0 Soybean clone JCVI-FLGm-2J8 unknown mRNA NA coding protein psRNATarget
XM_003550213.3
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  ||*||||||||||||||||||
targets:549   GAAGUGAAACUCCAAUUCUGA   569

1.0 PREDICTED: Glycine max uncharacterized LOC100817633 (LOC100817633), mRNA uncharacterized LOC100817633(LOC100817633) coding protein psRNATarget
XM_014776818.1
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  ||*||||||||||||||||||
targets:3382   GAAGUGAAACUCCAAUUCUGA   3402

1.0 PREDICTED: Glycine max formin-like protein 3 (LOC100780844), mRNA formin-like protein 3(LOC100780844) coding protein psRNATarget
XM_006585935.2
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  *||||||||||||||||=|||
targets:310   AAGGUGAAACUCCAAUUUUGA   330

1.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_006585934.2
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  *||||||||||||||||=|||
targets:310   AAGGUGAAACUCCAAUUUUGA   330

1.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_003542769.3
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  ||||||||*||||||||||||
targets:1444   GAGGUGAAUCUCCAAUUCUGA   1464

1.5 PREDICTED: Glycine max U-box domain-containing protein 11-like (LOC100819160), mRNA U-box domain-containing protein 11-like(LOC100819160) coding protein psRNATarget
XM_014762020.1
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  |||||*||||||=||||||||
targets:340   GAGGUAAAACUCUAAUUCUGA   360

2.5 PREDICTED: Glycine max uncharacterized LOC100778779 (LOC100778779), transcript variant X2, mRNA uncharacterized LOC100778779(LOC100778779) coding protein psRNATarget
JN201532.1
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  *||||*|||||||||||=|||
targets:220   AAGGUAAAACUCCAAUUUUGA   240

2.5 Glycine max clone Gm4-2 mRNA sequence NA coding protein psRNATarget
BT093404.1
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  *||*||||||||=||||||||
targets:588   AAGAUGAAACUCUAAUUCUGA   608

2.5 Soybean clone JCVI-FLGm-24I11 unknown mRNA NA coding protein psRNATarget
XM_003517326.3
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  |||*||||||||||*||||||
targets:1639   GAGAUGAAACUCCAUUUCUGA   1659

2.5 PREDICTED: Glycine max ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like (LOC100789438), mRNA ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like(LOC100789438) coding protein psRNATarget
XM_003554918.3
ncRNA:21   CUCCACUUUGAGGUUAAGACU   1
  *||||*|||||||||||*|||
targets:1603   AAGGUAAAACUCCAAUUAUGA   1623

2.5 PREDICTED: Glycine max uncharacterized LOC100811822 (LOC100811822), mRNA uncharacterized LOC100811822(LOC100811822) coding protein psRNATarget
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