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BaseInfo

ncRNA ID novel_gma_miR6
Species Glycine max
Class miRNA
Genome position Chr7:35071811-35071867 [+]
Reference genome Glycine_max_v2.0
Source SRR1451627;SRR1451631;SRR1451634;SRR1451648;SRR1451613
Length 21
Mature sequence(if miRNA) 1 - AAAACUCUCAAACCUGAUCCA - 21
Stem-loop(if miRNA) --                     CUG UU
  AAAACUCUCAAACCUGAUCCA   C  U
  |||||||||||||||||||||   |
  UUUUGAGAGUUUGGACUAGGU   G  C
CU                     -UA UA
Stem-loop sequence AAAACUCUCAAACCUGAUCCACUGCUUUCAUGAUUGGAUCAGGUUUGAGAGUUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003543290.3
ncRNA:21   ACCUAGUCCAAACUCUCAAAA   1
  **||**|||||||||||||||
targets:864   AAGAAGAGGUUUGAGAGUUUU   884

2.0 PREDICTED: Glycine max protein STABILIZED1-like (LOC100783360), mRNA protein STABILIZED1-like(LOC100783360) coding protein psRNATarget
XM_003540308.3
ncRNA:21   ACCUAGUCCAAACUCUCAAAA   1
  **||**|||||||||||||||
targets:958   AAGAAGAGGUUUGAGAGUUUU   978

2.0 PREDICTED: Glycine max protein STABILIZED1-like (LOC100779042), mRNA protein STABILIZED1-like(LOC100779042) coding protein psRNATarget
BT096648.1
ncRNA:21   ACCUAGUCCAAACUCUCAAAA   1
  **|||||*||||||||*||||
targets:779   GAGAUCAUGUUUGAGACUUUU   799

2.5 Soybean clone JCVI-FLGm-25P15 unknown mRNA NA coding protein psRNATarget
NM_001253344.1
ncRNA:21   ACCUAGUCCAAACUCUCAAAA   1
  **|||||*||||||||*||||
targets:773   GAGAUCAUGUUUGAGACUUUU   793

2.5 Glycine max actin-related protein 3-like (LOC100778870), mRNA actin-related protein 3-like(LOC100778870) coding protein psRNATarget
BT096665.1
ncRNA:21   ACCUAGUCCAAACUCUCAAAA   1
  **|||||*||||||||*||||
targets:773   GAGAUCAUGUUUGAGACUUUU   793

2.5 Soybean clone JCVI-FLGm-21C1 unknown mRNA NA coding protein psRNATarget
XM_014762568.1
ncRNA:21   ACCUAGUCCAAACUCUCAAAA   1
  *|*||=*||||||||||||||
targets:70   AGUAUUUGGUUUGAGAGUUUU   90

3.0 PREDICTED: Glycine max lipid phosphate phosphatase 2-like (LOC100805924), transcript variant X2, mRNA lipid phosphate phosphatase 2-like(LOC100805924) coding protein psRNATarget