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BaseInfo

ncRNA ID bol-miR9410
Species Brassica oleracea
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 22
Mature sequence(if miRNA) NA - UACUUAAUUAUAAGUCGUCUGG - NA
Stem-loop(if miRNA) -    C     U     AUUA                   A   A  CG
 CUUU CAGAC ACUUA    UAAGUCGUCUGGAAAGUCU CUA GU  U
 |||| ||||| |||||    ||||||||||||||||||| ||| ||
 GAAG GUCUG UGAAU    AUUCAGCAGACUUUUCAGA GGU CG  C
U    C     C     AUUA                   A   -  AC
Stem-loop sequence CUUUCCAGACUACUUAAUUAUAAGUCGUCUGGAAAGUCUACUAAGUCGUCCAGCUGGAAGACUUUUCAGACGACUUAAUUAUAAGUCGUCUGCGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013738880.1
ncRNA:22   GGUCUGCUGAAUAUUAAUUCAU   1
  ||=|||||||||*||||||||*
targets:73   CCGGACGACUUAGAAUUAAGUC   94

2.5 PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106302354 (LOC106302354), mRNA uncharacterized LOC106302354(LOC106302354) coding protein psRNATarget
XM_013750845.1
ncRNA:22   GGUCUGCUGAAUAUUAAUUCAU   1
  ||=|||||||||*||||||||*
targets:73   CCGGACGACUUAGAAUUAAGUC   94

2.5 PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106313107 (LOC106313107), mRNA uncharacterized LOC106313107(LOC106313107) coding protein psRNATarget

Reference

1 PMID:24245539
"High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves";
Lukasik A, Pietrykowska H, Paczek L, Szweykowska-Kulinska Z, Zielenkiewicz P;
BMC Genomics. 14:801(2013).