ncRNA ID | bol-miR9410 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | NA - UACUUAAUUAUAAGUCGUCUGG - NA |
Stem-loop(if miRNA) |
-    C     U     AUUA                   A   A  CG  CUUU CAGAC ACUUA    UAAGUCGUCUGGAAAGUCU CUA GU  U  |||| ||||| |||||    ||||||||||||||||||| ||| ||  GAAG GUCUG UGAAU    AUUCAGCAGACUUUUCAGA GGU CG  C U    C     C     AUUA                   A   -  AC |
Stem-loop sequence | CUUUCCAGACUACUUAAUUAUAAGUCGUCUGGAAAGUCUACUAAGUCGUCCAGCUGGAAGACUUUUCAGACGACUUAAUUAUAAGUCGUCUGCGAAGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013738880.1 |
|
2.5 | PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106302354 (LOC106302354), mRNA | uncharacterized LOC106302354(LOC106302354) | coding protein | psRNATarget | |||||||||
XM_013750845.1 |
|
2.5 | PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106313107 (LOC106313107), mRNA | uncharacterized LOC106313107(LOC106313107) | coding protein | psRNATarget |
1 | PMID:24245539
"High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves"; Lukasik A, Pietrykowska H, Paczek L, Szweykowska-Kulinska Z, Zielenkiewicz P; BMC Genomics. 14:801(2013). |