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BaseInfo

ncRNA ID	novel_gma_miR1
Species	Glycine max
Class	miRNA
Genome position	Chr18:44149968-44150153 [-]
Reference genome	Glycine_max_v2.0
Source	DRR031984;SRR1451632;SRR1451640;SRR1451641;SRR1451644;SRR1451645;SRR1451647;SRR1753104;SRR1753105;SRR1753108;SRR2045232;SRR3160566;SRR3160568;SRR3160569
Length	24
Mature sequence(if miRNA)	1 - AAGAAACAGUAAAAUCUAAAGGAC - 24
Stem-loop(if miRNA)	--    C                                                A       U  UG          -UU     CC    C   CCUU AGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUAGUAUAAG CUAUGGC UA  GACAUGGUCU   UUUAC  CUAA A   |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||   |||||  |||| A   GGAA UCUAAAAUGACAAAGAAAAACGAUUAUACAUUUAUAUUUAUCAUAUUC GAUACCG AU  UUGUACCAGA   AAAUG  GAUU U CA    A                                                C       C  UU          UAU     AA    C
Stem-loop sequence	CCUUCAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUAGUAUAAGACUAUGGCUUAUGGACAUGGUCUUUUUUACCCCUAACAAUCUUAGAAGUAAAUAUAGACCAUGUUUUUACGCCAUAGCCUUAUACUAUUUAUAUUUACAUAUUAGCAAAAAGAAACAGUAAAAUCUAAAGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006593805.2	ncRNA:24   CAGGAAAUCUAAAAUGACAAAGAA   1   ||||||*||||||||||||||||| targets:1503   GUCCUUCAGAUUUUACUGUUUCUU   1526 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006593804.2	ncRNA:24   CAGGAAAUCUAAAAUGACAAAGAA   1   ||||||*||||||||||||||||| targets:1527   GUCCUUCAGAUUUUACUGUUUCUU   1550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_014768036.1	ncRNA:24   CAG----GAAAUCUAAAAUGACAAAGAA   1   ||=----|||||||*||||=|||||||| targets:2738   GUUUUUGCUUUAGAAUUUAUUGUUUCUU   2765 Target Full Sequence	2.5	PREDICTED: Glycine max protein CASC3-like (LOC100779103), transcript variant X3, mRNA	protein CASC3-like(LOC100779103)	coding protein	psRNATarget
XM_006597081.2	ncRNA:24   CAG----GAAAUCUAAAAUGACAAAGAA   1   ||=----|||||||*||||=|||||||| targets:2799   GUUUUUGCUUUAGAAUUUAUUGUUUCUU   2826 Target Full Sequence	2.5	PREDICTED: Glycine max protein CASC3-like (LOC100779103), transcript variant X2, mRNA	protein CASC3-like(LOC100779103)	coding protein	psRNATarget
XM_014768035.1	ncRNA:24   CAG----GAAAUCUAAAAUGACAAAGAA   1   ||=----|||||||*||||=|||||||| targets:2828   GUUUUUGCUUUAGAAUUUAUUGUUUCUU   2855 Target Full Sequence	2.5	PREDICTED: Glycine max protein CASC3-like (LOC100779103), transcript variant X1, mRNA	protein CASC3-like(LOC100779103)	coding protein	psRNATarget
XM_014771046.1	ncRNA:24   CAGGAAAUCUAAAAUGACAAAGAA   1   *|==|||||*|||||||*|||||| targets:2219   UUUUUUUAGCUUUUACUCUUUCUU   2242 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100776331 (LOC100776331), transcript variant X2, mRNA	uncharacterized LOC100776331(LOC100776331)	coding protein	psRNATarget
XM_003528784.3	ncRNA:24   CAGGAAAUCUAAAAUGACAAAGAA   1   ||=|*|*||||||||||||||*|| targets:1693   GUUCCUGAGAUUUUACUGUUUGUU   1716 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At1g01500-like (LOC100784977), mRNA	uncharacterized protein At1g01500-like(LOC100784977)	coding protein	psRNATarget