ncRNA ID | bol-miR9409 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | NA - UUUUGUUCAUGACUGCAUUUUC - NA |
Stem-loop(if miRNA) |
A       U  A     A               ---U   A      - UA  AAAUAGA UG AAAAU CAGUCAUGAACAAAA    AAA AUUACU C  U  ||||||| || ||||| |||||||||||||||    ||| |||||| |  A  UUUAUCU AU UUUUA GUCAGUACUUGUUUU    UUU UAAUGA G  U -       C  C     C               UUCU   G      C UA |
Stem-loop sequence | AAAAUAGAUUGAAAAAUACAGUCAUGAACAAAAUAAAAAUUACUCUAUAUAUGCAGUAAUGUUUUCUUUUUUGUUCAUGACUGCAUUUUCUACUCUAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013775322.1 |
|
3.0 | PREDICTED: Brassica oleracea var. oleracea RNA polymerase II C-terminal domain phosphatase-like 1 (LOC106336486), mRNA | RNA polymerase II C-terminal domain phosphatase-like 1(LOC106336486) | coding protein | psRNATarget |
1 | PMID:24245539
"High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves"; Lukasik A, Pietrykowska H, Paczek L, Szweykowska-Kulinska Z, Zielenkiewicz P; BMC Genomics. 14:801(2013). |