Search result

BaseInfo

ncRNA ID bol-miR9409
Species Brassica oleracea
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 22
Mature sequence(if miRNA) NA - UUUUGUUCAUGACUGCAUUUUC - NA
Stem-loop(if miRNA) A       U  A     A               ---U   A      - UA
 AAAUAGA UG AAAAU CAGUCAUGAACAAAA    AAA AUUACU C  U
 ||||||| || ||||| |||||||||||||||    ||| |||||| |  A
 UUUAUCU AU UUUUA GUCAGUACUUGUUUU    UUU UAAUGA G  U
-       C  C     C               UUCU   G      C UA
Stem-loop sequence AAAAUAGAUUGAAAAAUACAGUCAUGAACAAAAUAAAAAUUACUCUAUAUAUGCAGUAAUGUUUUCUUUUUUGUUCAUGACUGCAUUUUCUACUCUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013775322.1
ncRNA:22   CUUUUACGUCAGUACUUGUUUU   1
  *|||||**|||||||||||||=
targets:2516   CAAAAUCAAGUCAUGAACAAAG   2537

3.0 PREDICTED: Brassica oleracea var. oleracea RNA polymerase II C-terminal domain phosphatase-like 1 (LOC106336486), mRNA RNA polymerase II C-terminal domain phosphatase-like 1(LOC106336486) coding protein psRNATarget

Reference

1 PMID:24245539
"High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves";
Lukasik A, Pietrykowska H, Paczek L, Szweykowska-Kulinska Z, Zielenkiewicz P;
BMC Genomics. 14:801(2013).