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BaseInfo

ncRNA ID	bol-miR172b
Species	Brassica oleracea
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - AGAAUCUUGAUGAUGCUGCAU - NA
Stem-loop(if miRNA)	U  A         C           A    -GAAAU G   AA         UA  GU GGUGCAGCA CAUUAAGAUUC CAUG      U AGA  ACCCUAAUU  U  || ||||||||| ||||||||||| ||||      | |||  |||||||||  CA CUACGUCGU GUAGUUCUAAG GUAU      A UCU  UGGGAUUAA  A A  A         A           A    AUGUAU G   --         UU
Stem-loop sequence	UGUAGGUGCAGCACCAUUAAGAUUCACAUGGAAAUUGAGAAAACCCUAAUUUAUAUUAAUUAGGGUUCUGAUAUGUAUAUGAGAAUCUUGAUGAUGCUGCAUCAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013776563.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:281   AUGCAGCAUCAUCAGGAUUCU   301 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE2 (LOC106337452), mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106337452)	coding protein	psRNATarget
XM_013759059.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1391   AUGCAGCAUCAUCAGGAUUCU   1411 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE2 (LOC106320676), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106320676)	coding protein	psRNATarget
XM_013759052.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1427   AUGCAGCAUCAUCAGGAUUCU   1447 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE2 (LOC106320676), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106320676)	coding protein	psRNATarget
XM_013759048.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1427   AUGCAGCAUCAUCAGGAUUCU   1447 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE2 (LOC106320676), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106320676)	coding protein	psRNATarget
XM_013757078.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1368   AUGCAGCAUCAUCAGGAUUCU   1388 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE2 (LOC106318914), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106318914)	coding protein	psRNATarget
XM_013757077.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1587   AUGCAGCAUCAUCAGGAUUCU   1607 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE2 (LOC106318914), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106318914)	coding protein	psRNATarget
XM_013761757.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1377   CUGCAGCAUCAUCAGGAUUCU   1397 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea floral homeotic protein APETALA 2 (LOC106323658), transcript variant X3, mRNA	floral homeotic protein APETALA 2(LOC106323658)	coding protein	psRNATarget
XM_013737748.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1383   CUGCAGCAUCAUCAGGAUUCU   1403 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea floral homeotic protein APETALA 2-like (LOC106301367), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC106301367)	coding protein	psRNATarget
XM_013761753.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1371   CUGCAGCAUCAUCAGGAUUCU   1391 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea floral homeotic protein APETALA 2 (LOC106323658), transcript variant X2, mRNA	floral homeotic protein APETALA 2(LOC106323658)	coding protein	psRNATarget
XM_013761746.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1374   CUGCAGCAUCAUCAGGAUUCU   1394 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea floral homeotic protein APETALA 2 (LOC106323658), transcript variant X1, mRNA	floral homeotic protein APETALA 2(LOC106323658)	coding protein	psRNATarget
XM_013737745.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1379   CUGCAGCAUCAUCAGGAUUCU   1399 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea floral homeotic protein APETALA 2-like (LOC106301367), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC106301367)	coding protein	psRNATarget
XM_013737746.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1379   CUGCAGCAUCAUCAGGAUUCU   1399 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea floral homeotic protein APETALA 2-like (LOC106301367), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC106301367)	coding protein	psRNATarget
XM_013767819.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1395   CAGCAGCAUCAUCAGGAUUCU   1415 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea ethylene-responsive transcription factor RAP2-7-like (LOC106329210), mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106329210)	coding protein	psRNATarget
XM_013775779.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1493   CAGCAGCAUCAUCAGGAUUCU   1513 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea ethylene-responsive transcription factor RAP2-7 (LOC106336836), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC106336836)	coding protein	psRNATarget
XM_013775778.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1538   CAGCAGCAUCAUCAGGAUUCU   1558 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea ethylene-responsive transcription factor RAP2-7 (LOC106336836), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC106336836)	coding protein	psRNATarget
XM_013781676.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:306   UUGUAACAUCAUCAAGAUUCU   326 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106342672), transcript variant X2, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106342672)	coding protein	psRNATarget
XM_013781675.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:181   UUGUAACAUCAUCAAGAUUCU   201 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106342672), transcript variant X1, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106342672)	coding protein	psRNATarget
XM_013781677.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:180   UUGUAACAUCAUCAAGAUUCU   200 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106342672), transcript variant X3, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106342672)	coding protein	psRNATarget
XM_013763686.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||=|||||||* targets:351   AUGCAGCAUCAUUAAGAUUCA   371 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106325640 (LOC106325640), transcript variant X1, mRNA	uncharacterized LOC106325640(LOC106325640)	coding protein	psRNATarget
XM_013763687.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||=|||||||* targets:351   AUGCAGCAUCAUUAAGAUUCA   371 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106325640 (LOC106325640), transcript variant X2, mRNA	uncharacterized LOC106325640(LOC106325640)	coding protein	psRNATarget
XM_013746533.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1116   UUGCAGCAUCAUCAGGAUUCC   1136 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor SMZ (LOC106309498), mRNA	AP2-like ethylene-responsive transcription factor SMZ(LOC106309498)	coding protein	psRNATarget
XM_013738114.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||*|||||||||=|||||| targets:1392   CUGCUGCAUCAUCAGGAUUCU   1412 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea AP2-like ethylene-responsive transcription factor TOE3 (LOC106301662), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC106301662)	coding protein	psRNATarget
XM_013735912.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **|*||||||||||||||*|| targets:296   UAGAAGCAUCAUCAAGAUCCU   316 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea LOB domain-containing protein 27-like (LOC106299888), transcript variant X2, mRNA	LOB domain-containing protein 27-like(LOC106299888)	coding protein	psRNATarget
XM_013735908.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **|*||||||||||||||*|| targets:296   UAGAAGCAUCAUCAAGAUCCU   316 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea LOB domain-containing protein 27-like (LOC106299888), transcript variant X1, mRNA	LOB domain-containing protein 27-like(LOC106299888)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).