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BaseInfo

ncRNA ID	bol-miR171a
Species	Brassica oleracea
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - UUGAGCCGUGCCAAUAUCACG - NA
Stem-loop(if miRNA)	AUG  A        UG             -AAU  ACA    UUU ACA   CG GAUAUUGG  CGGUUCAAUCAGA    CC   CUCU   G |||   || ||||||||  |||||||||||||    ||   |||| UGU   GC CUAUAACC  GCCGAGUUAGUUU    GG   GAGA   U    -GA  A        GU             GUUU  CUA    UGU
Stem-loop sequence	ACAAUGCGAGAUAUUGGUGCGGUUCAAUCAGAAAUCCACACUCUUUUGUUGUAGAGAUCGGUUUGUUUGAUUGAGCCGUGCCAAUAUCACGAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013738372.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   =|||||||||*|||||||||| targets:763   UGUGAUAUUGUCACGGCUCAA   783 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 15 (LOC106301887), mRNA	scarecrow-like protein 15(LOC106301887)	coding protein	psRNATarget
XM_013743768.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   =|*|||||||||=|||||||| targets:1142   UGAGAUAUUGGCGCGGCUCAA   1162 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea protein IQ-DOMAIN 31-like (LOC106306962), mRNA	protein IQ-DOMAIN 31-like(LOC106306962)	coding protein	psRNATarget
XM_013774713.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:899   AGGGAUAUUGGCGCGGCUCAA   919 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 27 (LOC106336006), mRNA	scarecrow-like protein 27(LOC106336006)	coding protein	psRNATarget
XM_013757041.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:888   GGGGAUAUUGGCGCGGCUCAA   908 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 6 (LOC106318883), mRNA	scarecrow-like protein 6(LOC106318883)	coding protein	psRNATarget
XM_013775656.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:955   AGGGAUAUUGGCGCGGCUCAA   975 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 22 (LOC106336726), mRNA	scarecrow-like protein 22(LOC106336726)	coding protein	psRNATarget
XM_013732473.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1015   AGGGAUAUUGGCGCGGCUCAA   1035 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 27 (LOC106296356), transcript variant X2, mRNA	scarecrow-like protein 27(LOC106296356)	coding protein	psRNATarget
XM_013732474.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1015   AGGGAUAUUGGCGCGGCUCAA   1035 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 27 (LOC106296356), transcript variant X3, mRNA	scarecrow-like protein 27(LOC106296356)	coding protein	psRNATarget
XM_013732472.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1051   AGGGAUAUUGGCGCGGCUCAA   1071 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea scarecrow-like protein 27 (LOC106296356), transcript variant X1, mRNA	scarecrow-like protein 27(LOC106296356)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).