Search result

BaseInfo

ncRNA ID	bol-miR157a
Species	Brassica oleracea
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - UUGACAGAAGAUAGAGAGCAC - NA
Stem-loop(if miRNA)	U           -           U     --U  C    A   ACAAGGA GGU GUUGACAGAAG AUAGAGAGCAC AAGGA   GA AUGC AGU       U ||| ||||||||||| ||||||||||| |||||   || |||| ||| CCA UAACUGUCUUC UAUCUCUCGUG UUUCU   UU UACG UUA       A    -           A           U     CAU  C    C   AAGGAAU
Stem-loop sequence	GGUUGUUGACAGAAGAUAGAGAGCACUAAGGAUGACAUGCAAGUACAAGGAUAUAAGGAAAUUCGCAUCUUUACUCUUUUGUGCUCUCUAUACUUCUGUCAAUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013754617.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2756   GUGCUCUCUUUCUUCUGUCAA   2776 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea probable L-type lectin-domain containing receptor kinase S.7 (LOC106316741), mRNA	probable L-type lectin-domain containing receptor kinase S.7(LOC106316741)	coding protein	psRNATarget
XM_013767867.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2225   GUGCUCUCUCUCUUCUGUCAA   2245 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106329242), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106329242)	coding protein	psRNATarget
XM_013742692.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1898   GUGCUCUCUCUCUUCUGUCAA   1918 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X7, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742687.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1815   GUGCUCUCUCUCUUCUGUCAA   1835 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742688.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1812   GUGCUCUCUCUCUUCUGUCAA   1832 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X4, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742685.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1555   GUGCUCUCUCUCUUCUGUCAA   1575 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013767866.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1578   GUGCUCUCUCUCUUCUGUCAA   1598 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106329242), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106329242)	coding protein	psRNATarget
XM_013737621.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1433   GUGCUCUCUCUCUUCUGUCAA   1453 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737622.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1415   GUGCUCUCUCUCUUCUGUCAA   1435 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737623.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1257   GUGCUCUCUCUCUUCUGUCAA   1277 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013781615.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1130   GUGCUCUCUCUCUUCUGUCAA   1150 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 9 (LOC106342625), mRNA	squamosa promoter-binding-like protein 9(LOC106342625)	coding protein	psRNATarget
XM_013751939.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1232   GUGCUCUCUCUCUUCUGUCAA   1252 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013742684.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1426   GUGCUCUCUCUCUUCUGUCAA   1446 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742681.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1357   GUGCUCUCUCUCUUCUGUCAA   1377 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742686.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1269   GUGCUCUCUCUCUUCUGUCAA   1289 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013737624.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1156   GUGCUCUCUCUCUUCUGUCAA   1176 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737625.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1154   GUGCUCUCUCUCUUCUGUCAA   1174 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013742683.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1322   GUGCUCUCUCUCUUCUGUCAA   1342 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742689.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1240   GUGCUCUCUCUCUUCUGUCAA   1260 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X5, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742691.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1237   GUGCUCUCUCUCUUCUGUCAA   1257 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X6, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742682.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1299   GUGCUCUCUCUCUUCUGUCAA   1319 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013782113.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1052   GUGCUCUCUCUCUUCUGUCAA   1072 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 9 (LOC106343015), mRNA	squamosa promoter-binding-like protein 9(LOC106343015)	coding protein	psRNATarget
XM_013751936.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1117   GUGCUCUCUCUCUUCUGUCAA   1137 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013751937.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1071   GUGCUCUCUCUCUUCUGUCAA   1091 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013781267.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:778   GUGCUCUCUCUCUUCUGUCAA   798 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 15 (LOC106342356), mRNA	squamosa promoter-binding-like protein 15(LOC106342356)	coding protein	psRNATarget
XM_013736349.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:696   GUGCUCUCUCUCUUCUGUCAA   716 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 15 (LOC106300247), mRNA	squamosa promoter-binding-like protein 15(LOC106300247)	coding protein	psRNATarget
XM_013730966.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1408   GUGCUUUCUCUCUUCUGUCAA   1428 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730967.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1344   GUGCUUUCUCUCUUCUGUCAA   1364 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730972.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||=|||||*||||||||||| targets:1427   GUGUUCUCUCUCUUCUGUCAA   1447 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013730968.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1316   GUGCUUUCUCUCUUCUGUCAA   1336 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730969.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1315   GUGCUUUCUCUCUUCUGUCAA   1335 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X5, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730970.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||=|||||*||||||||||| targets:1323   GUGUUCUCUCUCUUCUGUCAA   1343 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013730965.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1204   GUGCUUUCUCUCUUCUGUCAA   1224 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013762722.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||= targets:866   GUGCUCUCUCUCUUCUGUCAG   886 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013730971.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||=|||||*||||||||||| targets:1109   GUGUUCUCUCUCUUCUGUCAA   1129 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013762723.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||= targets:791   GUGCUCUCUCUCUUCUGUCAG   811 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013762724.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||= targets:764   GUGCUCUCUCUCUUCUGUCAG   784 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013754743.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1608   GUGCUCUCUCUCUUCUGUCAU   1628 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106316874), mRNA	squamosa promoter-binding-like protein 13A(LOC106316874)	coding protein	psRNATarget
XM_013771182.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   *||||||||*||||||||||* targets:1107   UUGCUCUCUCUCUUCUGUCAU   1127 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106332708), mRNA	squamosa promoter-binding-like protein 13A(LOC106332708)	coding protein	psRNATarget
XM_013735044.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   *||||||||*||||||||||* targets:832   CUGCUCUCUCUCUUCUGUCAU   852 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 4 (LOC106298914), mRNA	squamosa promoter-binding-like protein 4(LOC106298914)	coding protein	psRNATarget
XM_013735040.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   *||||||||*||||||||||* targets:783   UUGCUCUCUCUCUUCUGUCAU   803 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 4 (LOC106298910), transcript variant X2, mRNA	squamosa promoter-binding-like protein 4(LOC106298910)	coding protein	psRNATarget
XM_013770287.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |*|||||||*||||||||||* targets:1108   GCGCUCUCUCUCUUCUGUCAU   1128 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106331858), mRNA	squamosa promoter-binding-like protein 13A(LOC106331858)	coding protein	psRNATarget
XM_013783375.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   **|||||||*||||||||||* targets:794   CCGCUCUCUCUCUUCUGUCAU   814 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 5 (LOC106344002), mRNA	squamosa promoter-binding-like protein 5(LOC106344002)	coding protein	psRNATarget
XM_013740569.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   **|||||||*||||||||||* targets:648   CAGCUCUCUCUCUUCUGUCAU   668 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 5 (LOC106304169), mRNA	squamosa promoter-binding-like protein 5(LOC106304169)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).