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BaseInfo

ncRNA ID	ath-miR831-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:10247206-10247462 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	54 - AGAAGCGUACAAGGAGAUGAGG - 75
Stem-loop(if miRNA)	GCACA    G ACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCACCAAAACAAGUGGUUU      AUGC G                                                                                                                       U      |||| |      CCGA A                                                                                                                       G ----U    - AAACCAUUUGGUACGGCUACAAUGUACAUCUCACAGUAUCUUAGCGUUCUUCUCAUGCUUCUCUAGUCUUCAUUUGUGUGGUUUGUUCACAAAACCCAUUUGGUAUGACUAAGUGUUUG
Stem-loop sequence	GCACAAUGCGGACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCAGUAUGGUUUACCCAAAACACUUGUUUGGUGUGUUUACUUCUGAUCUCUUCGUACUCUUCUUGCGAUUCUAUGACACUCUACAUGUAACAUCGGCAUGGUUUACCAAAAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK230127.1	ncRNA:22   GGAGUAGAGGAACAUGCGAAGA   1   |||||||||||||||||||||| targets:2909   CCUCAUCUCCUUGUACGCUUCU   2930 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-80-B20	NA	coding protein	psRNATarget
NM_001085236.2	ncRNA:22   GGAGUAGAGGAACAUGCGAAGA   1   =||||||*|*|||||||||||| targets:1252   UCUCAUCACAUUGUACGCUUCU   1273 Target Full Sequence	2.5	Arabidopsis thaliana CAP-binding protein 20 (CBP20), mRNA	CAP-binding protein 20(CBP20)	coding protein	psRNATarget
NM_123787.4	ncRNA:22   GGAGUAGAGGAACAUGCGAAGA   1   =||||||*|*|||||||||||| targets:1250   UCUCAUCACAUUGUACGCUUCU   1271 Target Full Sequence	2.5	Arabidopsis thaliana CAP-binding protein 20 (CBP20), mRNA	CAP-binding protein 20(CBP20)	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:24119003 "Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013).