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BaseInfo

ncRNA ID	bna-miR159
Species	Brassica napus
Class	miRNA
Genome position	EM:EX072729:247-429 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	161 - UUUGGAUUGAAGGGAGCUCUA - 181
Stem-loop(if miRNA)	-            A         C      -UU    ------      AGA      G  A  C    A UC     -    CU       AUA  GUAGGGCUCCUU UAGUUCAAA GAGAGU   AGCA      GGGUAA   AAAGCU CU AG UAUG A  CCAUA AGCC  AAUCCUU   U  |||||||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   A  CAUCUCGAGGGA GUUAGGUUU UUCUCA   UCGU      CCCGUU   UUUCGA GA UC AUAC U  GGUAU UUGG  UUAGGAA   U A            A         C      UUU    UAAUUU      CAA      G  C  U    A UC     A    -U       AAA
Stem-loop sequence	GUAGGGCUCCUUAUAGUUCAAACGAGAGUUUAGCAGGGUAAAGAAAAGCUGCUAAGCUAUGAAUCCCAUAAGCCCUAAUCCUUAUAUAUAAAAAGGAUUUGGUUAUAUGGCUUACAUAUCUCAGGAGCUUUAACUUGCCCUUUAAUUGCUUUUACUCUUCUUUGGAUUGAAGGGAGCUCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013859253.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||||||||||||*||||| targets:1109   AAGAGCUCCCUUCAAACCAAA   1129 Target Full Sequence	1.5	PREDICTED: Brassica napus transcription factor MYB28-like (LOC106418525), mRNA	transcription factor MYB28-like(LOC106418525)	coding protein	psRNATarget
XM_013868384.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |||||||=|||||||*||||| targets:884   UAGAGCUUCCUUCAAACCAAA   904 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106427664), mRNA	transcription factor GAMYB-like(LOC106427664)	coding protein	psRNATarget
KR076552.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:875   UGGAGCUCCCUUCAUUCCAAU   895 Target Full Sequence	2.5	Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_013809665.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||=|||||||||*||||| targets:740   AAGAGUUCCCUUCAAACCAAA   760 Target Full Sequence	2.5	PREDICTED: Brassica napus hybrid signal transduction histidine kinase A-like (LOC106369519), mRNA	hybrid signal transduction histidine kinase A-like(LOC106369519)	coding protein	psRNATarget
XM_013876648.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:977   UGGAGCUCCCUUCAUUCCAAU   997 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC106435733)	coding protein	psRNATarget
XM_013876646.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1093   UGGAGCUCCCUUCAUUCCAAU   1113 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC106435733)	coding protein	psRNATarget
XM_013809700.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||=|||||||||*||||| targets:1091   AAGAGUUCCCUUCAAACCAAA   1111 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB26-like (LOC106369561), mRNA	transcription factor MYB26-like(LOC106369561)	coding protein	psRNATarget
XM_013879558.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1023   UGGAGCUCCCUUCAUUCCAAU   1043 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X3, mRNA	transcription factor MYB104-like(LOC106438414)	coding protein	psRNATarget
XM_013849472.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||=|||||||||*||||| targets:1163   AAGAGUUCCCUUCAAACCAAA   1183 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB26-like (LOC106408769), mRNA	transcription factor MYB26-like(LOC106408769)	coding protein	psRNATarget
XM_013863608.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1053   UGGAGCUCCCUUCAUUCCAAU   1073 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X4, mRNA	transcription factor GAMYB-like(LOC106422808)	coding protein	psRNATarget
XM_013876651.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X6, mRNA	transcription factor GAMYB-like(LOC106435733)	coding protein	psRNATarget
XM_013863607.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1073   UGGAGCUCCCUUCAUUCCAAU   1093 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC106422808)	coding protein	psRNATarget
XM_013876650.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X5, mRNA	transcription factor GAMYB-like(LOC106435733)	coding protein	psRNATarget
XM_013876649.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X4, mRNA	transcription factor GAMYB-like(LOC106435733)	coding protein	psRNATarget
XM_013876645.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1101   UGGAGCUCCCUUCAUUCCAAU   1121 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC106435733)	coding protein	psRNATarget
XM_013894677.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1115   UGGAGCUCCCUUCAUUCCAAU   1135 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X2, mRNA	transcription factor GAMYB(LOC106452529)	coding protein	psRNATarget
XM_013879555.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1266   UGGAGCUCCCUUCAUUCCAAU   1286 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X1, mRNA	transcription factor MYB104-like(LOC106438414)	coding protein	psRNATarget
XM_013828451.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1344   UGGAGCUCCCUUCAUUCCAAU   1364 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388394), mRNA	transcription factor MYB104-like(LOC106388394)	coding protein	psRNATarget
XM_013879650.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1344   UGGAGCUCCCUUCAUUCCAAU   1364 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438484), mRNA	transcription factor MYB104-like(LOC106438484)	coding protein	psRNATarget
XM_013828453.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1344   UGGAGCUCCCUUCAUUCCAAU   1364 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388396), mRNA	transcription factor MYB104-like(LOC106388396)	coding protein	psRNATarget
XM_013879557.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1478   UGGAGCUCCCUUCAUUCCAAU   1498 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X2, mRNA	transcription factor MYB104-like(LOC106438414)	coding protein	psRNATarget
XM_013894678.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1568   UGGAGCUCCCUUCAUUCCAAU   1588 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X3, mRNA	transcription factor GAMYB(LOC106452529)	coding protein	psRNATarget
XM_013894676.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1568   UGGAGCUCCCUUCAUUCCAAU   1588 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X1, mRNA	transcription factor GAMYB(LOC106452529)	coding protein	psRNATarget
XM_013863605.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1645   UGGAGCUCCCUUCAUUCCAAU   1665 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC106422808)	coding protein	psRNATarget
XM_013863606.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1645   UGGAGCUCCCUUCAUUCCAAU   1665 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC106422808)	coding protein	psRNATarget
XM_013863609.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1645   UGGAGCUCCCUUCAUUCCAAU   1665 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X5, mRNA	transcription factor GAMYB-like(LOC106422808)	coding protein	psRNATarget
XM_013876422.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:489   UAGAGCCCCCUUCAAACCAAA   509 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106435524 (LOC106435524), partial mRNA	uncharacterized LOC106435524(LOC106435524)	coding protein	psRNATarget
XM_013825691.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:627   UAGAGCCCCCUUCAAACCAAA   647 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106385789 (LOC106385789), transcript variant X2, mRNA	uncharacterized LOC106385789(LOC106385789)	coding protein	psRNATarget
XM_013825690.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:627   UAGAGCCCCCUUCAAACCAAA   647 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106385789 (LOC106385789), transcript variant X1, mRNA	uncharacterized LOC106385789(LOC106385789)	coding protein	psRNATarget
XM_013885042.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:660   UAGAGCCCCCUUCAAACCAAA   680 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106443481 (LOC106443481), mRNA	uncharacterized LOC106443481(LOC106443481)	coding protein	psRNATarget
XM_013791371.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||*||||||||||*||||| targets:1139   AAGACCUCCCUUCAAACCAAA   1159 Target Full Sequence	2.5	PREDICTED: Brassica napus transcription factor MYB26-like (LOC106351590), mRNA	transcription factor MYB26-like(LOC106351590)	coding protein	psRNATarget
XM_013790894.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||*||||||||||*||||| targets:1148   AAGACCUCCCUUCAAACCAAA   1168 Target Full Sequence	2.5	PREDICTED: Brassica napus myb-like protein A (LOC106351074), mRNA	myb-like protein A(LOC106351074)	coding protein	psRNATarget
XM_013790193.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=*|||||||*|||||||||| targets:276   CGAAGCUCCCCUCAAUCCAAA   296 Target Full Sequence	2.5	PREDICTED: Brassica napus actin-1-like (LOC106350285), mRNA	actin-1-like(LOC106350285)	coding protein	psRNATarget
XM_013847653.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=*|||||||*|||||||||| targets:324   CGAAGCUCCCCUCAAUCCAAA   344 Target Full Sequence	2.5	PREDICTED: Brassica napus actin-12-like (LOC106406909), mRNA	actin-12-like(LOC106406909)	coding protein	psRNATarget
XM_013787297.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=*|||||||*|||||||||| targets:492   CGAAGCUCCCCUCAAUCCAAA   512 Target Full Sequence	2.5	PREDICTED: Brassica napus actin-12 (LOC106347709), mRNA	actin-12(LOC106347709)	coding protein	psRNATarget
XM_013823447.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ***||||=||||||||||||* targets:1621   AUCAGCUUCCUUCAAUCCAAC   1641 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106383332 (LOC106383332), mRNA	uncharacterized LOC106383332(LOC106383332)	coding protein	psRNATarget
XM_013819110.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ***||||=||||||||||||* targets:2575   AUUAGCUUCCUUCAAUCCAAC   2595 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106379093 (LOC106379093), mRNA	uncharacterized LOC106379093(LOC106379093)	coding protein	psRNATarget
XM_013844780.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ***||||=||||||||||||* targets:2575   AUUAGCUUCCUUCAAUCCAAC   2595 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106404017 (LOC106404017), mRNA	uncharacterized LOC106404017(LOC106404017)	coding protein	psRNATarget
XM_013819109.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ***||||=||||||||||||* targets:2701   AUCAGCUUCCUUCAAUCCAAC   2721 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106379092 (LOC106379092), mRNA	uncharacterized LOC106379092(LOC106379092)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).
2	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).