| ncRNA ID | ath-miR831-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:10247206-10247462 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 185 - UGAUCUCUUCGUACUCUUCUUG - 206 |
| Stem-loop(if miRNA) |
GCACA G ACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCACCAAAACAAGUGGUUU AUGC G U |||| | CCGA A G ----U - AAACCAUUUGGUACGGCUACAAUGUACAUCUCACAGUAUCUUAGCGUUCUUCUCAUGCUUCUCUAGUCUUCAUUUGUGUGGUUUGUUCACAAAACCCAUUUGGUAUGACUAAGUGUUUG |
| Stem-loop sequence | GCACAAUGCGGACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCAGUAUGGUUUACCCAAAACACUUGUUUGGUGUGUUUACUUCUGAUCUCUUCGUACUCUUCUUGCGAUUCUAUGACACUCUACAUGUAACAUCGGCAUGGUUUACCAAAAAGCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK230127.1 |
|
0.0 | Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-80-B20 | NA | coding protein | psRNATarget | |||||||||
| NM_112054.1 |
|
3.0 | Arabidopsis thaliana golgin family A protein partial mRNA | golgin family A protein(AT3G12190) | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |