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BaseInfo

ncRNA ID	ath-miR5595a
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:10026910-10027050 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	101 - ACAUAUGAUCUGCAUCUUUGC - 121
Stem-loop(if miRNA)	---------------    --   GAUAU -  CAUGGACAUAUGAUCUGCAUCUUUGCACUUGAAAAUGCAAAGAUGCAG                AGGC  UUU     U AA                                                A                ||||  |||     | ||                UGGA  GUA     G AG                                                U UUUGACAAAUAUACA    CG   ----- A  UUCUCUAUUACUAUCUAAAGAACUCCGAAAACUAUUGUACCUGUAUAC
Stem-loop sequence	AGGCUUUGAUAUUAACAUGGACAUAUGAUCUGCAUCUUUGCACUUGAAAAUGCAAAGAUGCAGAUCAUAUGUCCAUGUUAUCAAAAGCCUCAAGAAAUCUAUCAUUAUCUCUUGAAGAUGGCAGGUACAUAUAAACAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ056539.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:455   UCAAAGAUGCAGAUCAUAUGG   475 Target Full Sequence	1.0	Arabidopsis thaliana hydrolase (At2g23570) mRNA, complete cds	NA	coding protein	psRNATarget
AB493724.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:686   UCAAAGAUGCAGAUCAUAUGC   706 Target Full Sequence	1.0	Arabidopsis thaliana At4g37150 mRNA for hypothetical protein, partial cds, clone: RAAt4g37150	NA	coding protein	psRNATarget
BT006227.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:686   UCAAAGAUGCAGAUCAUAUGC   706 Target Full Sequence	1.0	Arabidopsis thaliana At4g37150 gene, complete cds	NA	coding protein	psRNATarget
BT012414.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:698   UCAAAGAUGCAGAUCAUAUGC   718 Target Full Sequence	1.0	Arabidopsis thaliana At2g23560 mRNA, complete cds	NA	coding protein	psRNATarget
BX829016.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:724   UCAAAGAUGCAGAUCAUAUGC   744 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL5ZG07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK117107.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:736   UCAAAGAUGCAGAUCAUAUGC   756 Target Full Sequence	1.0	Arabidopsis thaliana At4g37150 mRNA for putative ap2 hydroxynitrile lyase, complete cds, clone: RAFL16-64-I21	NA	coding protein	psRNATarget
BT010709.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:798   UCAAAGAUGCAGAUCAUAUGC   818 Target Full Sequence	1.0	Arabidopsis thaliana At2g23560 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001335855.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:719   UCAAAGAUGCAGAUCAUAUGG   739 Target Full Sequence	1.0	Arabidopsis thaliana methyl esterase 19 (MES19), mRNA	methyl esterase 19(MES19)	coding protein	psRNATarget
NM_119878.5	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:908   UCAAAGAUGCAGAUCAUAUGC   928 Target Full Sequence	1.0	Arabidopsis thaliana methyl esterase 9 (MES9), mRNA	methyl esterase 9(MES9)	coding protein	psRNATarget
NM_127920.3	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *|||||||||||||||||||* targets:859   UCAAAGAUGCAGAUCAUAUGC   879 Target Full Sequence	1.0	Arabidopsis thaliana methyl esterase 7 (MES7), mRNA	methyl esterase 7(MES7)	coding protein	psRNATarget
BT015031.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||||*||||||||||||* targets:707   UCAAAGACGCAGAUCAUAUGC   727 Target Full Sequence	2.0	Arabidopsis thaliana At2g23610 mRNA, complete cds	NA	coding protein	psRNATarget
BT014901.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||||*||||||||||||* targets:714   UCAAAGACGCAGAUCAUAUGC   734 Target Full Sequence	2.0	Arabidopsis thaliana At2g23610 gene, complete cds	NA	coding protein	psRNATarget
BX821370.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||||*||||||||||||* targets:732   UCAAAGACGCAGAUCAUAUGC   752 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL37ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001335858.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||||*||||||||||||* targets:701   UCAAAGACGCAGAUCAUAUGC   721 Target Full Sequence	2.0	Arabidopsis thaliana methyl esterase 3 (MES3), mRNA	methyl esterase 3(MES3)	coding protein	psRNATarget
NM_127925.3	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||||*||||||||||||* targets:1286   UCAAAGACGCAGAUCAUAUGC   1306 Target Full Sequence	2.0	Arabidopsis thaliana methyl esterase 3 (MES3), mRNA	methyl esterase 3(MES3)	coding protein	psRNATarget
BT010429.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:707   UCAAAUGUGCAGAUCAUAUGG   727 Target Full Sequence	3.0	Arabidopsis thaliana At2g23580 mRNA, complete cds	NA	coding protein	psRNATarget
AK175772.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:724   UCAAAUGUGCAGAUCAUAUGG   744 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for putative acetone-cyanohydrin lyase, complete cds, clone: RAFL22-34-J16	NA	coding protein	psRNATarget
BT004125.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:717   UCAAAUGUGCAGAUCAUAUGC   737 Target Full Sequence	3.0	Arabidopsis thaliana clone RAFL15-14-C06 (R20688) putative acetone-cyanohydrin lyase (At2g23550) mRNA, partial cds	NA	coding protein	psRNATarget
NM_179711.2	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:630   UCAAAUGUGCAGAUCAUAUGC   650 Target Full Sequence	3.0	Arabidopsis thaliana methyl esterase 6 (MES6), mRNA	methyl esterase 6(MES6)	coding protein	psRNATarget
NM_127919.4	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:735   UCAAAUGUGCAGAUCAUAUGC   755 Target Full Sequence	3.0	Arabidopsis thaliana methyl esterase 6 (MES6), mRNA	methyl esterase 6(MES6)	coding protein	psRNATarget
NM_001202655.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:663   UCAAAUGUGCAGAUCAUAUGG   683 Target Full Sequence	3.0	Arabidopsis thaliana methyl esterase 4 (MES4), mRNA	methyl esterase 4(MES4)	coding protein	psRNATarget
NM_127922.3	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:724   UCAAAUGUGCAGAUCAUAUGG   744 Target Full Sequence	3.0	Arabidopsis thaliana methyl esterase 4 (MES4), mRNA	methyl esterase 4(MES4)	coding protein	psRNATarget
NM_001335854.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:842   UCAAAUGUGCAGAUCAUAUGC   862 Target Full Sequence	3.0	Arabidopsis thaliana methyl esterase 6 (MES6), mRNA	methyl esterase 6(MES6)	coding protein	psRNATarget
NM_001335853.1	ncRNA:21   CGUUUCUACGUCUAGUAUACA   1   *||||*=|||||||||||||* targets:717   UCAAAUGUGCAGAUCAUAUGC   737 Target Full Sequence	3.0	Arabidopsis thaliana methyl esterase 6 (MES6), mRNA	methyl esterase 6(MES6)	coding protein	psRNATarget

Reference

1	PMID:22221297 "Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012).