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BaseInfo

ncRNA ID	bna-miR166a
Species	Brassica napus
Class	miRNA
Genome position	EM:DX911364:697-831 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	5 - UCGGACCAGGCUUCAUUCCCC - 25
Stem-loop(if miRNA)	-UUGA       UU      CU   A        CUU   --AU        UUCU     UUAAUCGAAU      GGGAAUG  GUUUGG  CGA GACUCUAG   AUC    GUUAGAUC    UCGAU          C      |||||||  ||||||  ||| ||||||||   |||    ||||||||    |||||      CCCUUAC  CGGACC  GCU CUGGGAUU   UAG    UAGUCUAG    AGUUU          A AACCC       UU      AG   G        --U   GAUU        ----     GUACCUCCAA
Stem-loop sequence	UUGAGGGAAUGUUGUUUGGCUCGAAGACUCUAGCUUAUCAUGUUAGAUCUUCUUCGAUUUAAUCGAAUCAAACCUCCAUGUUUGAGAUCUGAUUUAGGAUUUUAGGGUCGUCGGACCAGGCUUCAUUCCCCCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013869322.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:548   CUGGAAUGAAGCCUGGUCCGG   568 Target Full Sequence	1.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15-like (LOC106428572), mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC106428572)	coding protein	psRNATarget
XM_013869323.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:210   CUGGAAUGAAGCCUGGUCCGG   230 Target Full Sequence	1.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15-like (LOC106428573), mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC106428573)	coding protein	psRNATarget
XM_013784922.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1155   CUGGAAUGAAGCCUGGUCCGG   1175 Target Full Sequence	1.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15 (LOC106345748), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15(LOC106345748)	coding protein	psRNATarget
XM_013784921.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1155   CUGGAAUGAAGCCUGGUCCGG   1175 Target Full Sequence	1.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15 (LOC106345748), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15(LOC106345748)	coding protein	psRNATarget
XM_013874871.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:101   CUGGGAUGAAGCCUGGUCCGG   121 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106434033), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106434033)	coding protein	psRNATarget
XM_013874872.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1000   CUGGGAUGAAGCCUGGUCCGG   1020 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106434034), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106434034)	coding protein	psRNATarget
XM_013804628.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:798   CUGGGAUGAAGCCUGGUCCGG   818 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8 (LOC106365075), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8(LOC106365075)	coding protein	psRNATarget
XM_013804561.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:868   CUGGGAUGAAGCCUGGUCCGG   888 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8 (LOC106365075), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8(LOC106365075)	coding protein	psRNATarget
XM_013815197.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:895   CUGGGAUGAAGCCUGGUCCGG   915 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106375319), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106375319)	coding protein	psRNATarget
XM_013815198.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:896   CUGGGAUGAAGCCUGGUCCGG   916 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106375319), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106375319)	coding protein	psRNATarget
XM_013889094.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:882   UUGGGAUGAAGCCUGGUCCGG   902 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14-like (LOC106447219), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC106447219)	coding protein	psRNATarget
XM_013807005.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:826   UUGGGAUGAAGCCUGGUCCGG   846 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-9 (LOC106367270), mRNA	homeobox-leucine zipper protein ATHB-9(LOC106367270)	coding protein	psRNATarget
XM_013851839.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:834   UUGGGAUGAAGCCUGGUCCGG   854 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-9-like (LOC106411145), mRNA	homeobox-leucine zipper protein ATHB-9-like(LOC106411145)	coding protein	psRNATarget
XM_013811699.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:829   CUGGGAUGAAGCCUGGUCCGG   849 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA(LOC106371619)	coding protein	psRNATarget
XM_013873597.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:883   UUGGGAUGAAGCCUGGUCCGG   903 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14 (LOC106432754), mRNA	homeobox-leucine zipper protein ATHB-14(LOC106432754)	coding protein	psRNATarget
XM_013800819.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:919   CUGGGAUGAAGCCUGGUCCGG   939 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106361118)	coding protein	psRNATarget
XM_013811700.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:964   CUGGGAUGAAGCCUGGUCCGG   984 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X3, mRNA	homeobox-leucine zipper protein REVOLUTA(LOC106371619)	coding protein	psRNATarget
XM_013800820.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1005   CUGGGAUGAAGCCUGGUCCGG   1025 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106361118)	coding protein	psRNATarget
XM_013811698.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:994   CUGGGAUGAAGCCUGGUCCGG   1014 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA(LOC106371619)	coding protein	psRNATarget
XM_013800821.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1038   CUGGGAUGAAGCCUGGUCCGG   1058 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X3, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC106361118)	coding protein	psRNATarget
XM_013825067.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1190   CUGGGAUGAAGCCUGGUCCGG   1210 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106385108), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC106385108)	coding protein	psRNATarget
XM_013787043.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:399   CUGGUAUGAAGCCUGGUCCGG   419 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X3, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC106347496)	coding protein	psRNATarget
XM_013787042.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:984   CUGGUAUGAAGCCUGGUCCGG   1004 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC106347496)	coding protein	psRNATarget
XM_013787041.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1044   CUGGUAUGAAGCCUGGUCCGG   1064 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC106347496)	coding protein	psRNATarget
XM_013837246.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1042   UUGGUAUGAAGCCUGGUCCGG   1062 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14 (LOC106396769), mRNA	homeobox-leucine zipper protein ATHB-14(LOC106396769)	coding protein	psRNATarget
XM_013820336.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1019   CUGGUAUGAAGCCUGGUCCGG   1039 Target Full Sequence	2.0	PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106380559), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC106380559)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).