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BaseInfo

ncRNA ID	bna-miR169b
Species	Brassica napus
Class	miRNA
Genome position	EM:DX901870:437-624 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	18 - CAGCCAAGGAUGACUUGCCGA - 38
Stem-loop(if miRNA)	-     U  UG  C         U            UGAAAU        AAUACUUUA      -  UC  - UCAGUUUCAAAUUUGUCUUGG GUGAC CAAAG AG  UG AGCCAAGGA GACUUGCCGAUU      AUAUUUUU         CUAAGA CA  UU U                     A ||||| ||||| ||  || ||||||||| ||||||||||||      ||||||||         |||||| ||  || |                     G CGCUG GUUUC UU  AC UCGGUUCCU UUGAACGGCUAG      UAUAAAAA         UUUGAU CU  UU U                     A      U     U  GU  A         U            ------        ----AGAAA      G  --  A UUAACAUUAAAGAAGGAUCGG
Stem-loop sequence	GUGACCAAAGUAGUGUGCAGCCAAGGAUGACUUGCCGAUUUGAAAUAUAUUUUUAAUACUUUACUAAGACAUCUUUUCAGUUUCAAAUUUGUCUUGGAGAGGCUAGGAAGAAAUUACAAUUUAUUUCGUAGUUUAAAGAAAAAAUAUGAUCGGCAAGUUUUCCUUGGCUACAUGUUUCUUUGUGUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013817827.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1123   ACGGGAAGUCAUCCUUGGCUA   1143 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817826.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1127   ACGGGAAGUCAUCCUUGGCUA   1147 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817825.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1148   ACGGGAAGUCAUCCUUGGCUA   1168 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817829.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1336   ACGGGAAGUCAUCCUUGGCUA   1356 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817828.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1340   ACGGGAAGUCAUCCUUGGCUA   1360 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817830.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1378   ACGGGAAGUCAUCCUUGGCUA   1398 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013872447.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:894   AGGGGAAGUCAUCCUUGGCUA   914 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106431642)	coding protein	psRNATarget
XM_013872446.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:897   AGGGGAAGUCAUCCUUGGCUA   917 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106431642)	coding protein	psRNATarget
XM_013846894.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1276   AGGGGAAGUCAUCCUUGGCUA   1296 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406270), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106406270)	coding protein	psRNATarget
XM_013843696.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1280   AGGGGAAGUCAUCCUUGGCUA   1300 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106402883)	coding protein	psRNATarget
XM_013840111.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1288   GGGGGAAGUCAUCCUUGGCUA   1308 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106399653), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106399653)	coding protein	psRNATarget
XM_013837663.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1289   GGGGGAAGUCAUCCUUGGCUA   1309 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106397102), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106397102)	coding protein	psRNATarget
XM_013821179.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1276   GGGGGAAGUCAUCCUUGGCUA   1296 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013846895.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1223   AGGGGAAGUCAUCCUUGGCUA   1243 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406271), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106406271)	coding protein	psRNATarget
XM_013821178.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1295   GGGGGAAGUCAUCCUUGGCUA   1315 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013843695.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1313   AGGGGAAGUCAUCCUUGGCUA   1333 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106402883)	coding protein	psRNATarget
XM_013794135.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1314   AGGGGAAGUCAUCCUUGGCUA   1334 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106354243), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106354243)	coding protein	psRNATarget
XM_013843873.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1377   AGGGGAAGUCAUCCUUGGCUA   1397 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106403032)	coding protein	psRNATarget
XM_013843872.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1385   AGGGGAAGUCAUCCUUGGCUA   1405 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106403032)	coding protein	psRNATarget
XM_013821177.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1390   GGGGGAAGUCAUCCUUGGCUA   1410 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013821176.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1402   GGGGGAAGUCAUCCUUGGCUA   1422 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013821175.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1610   GGGGGAAGUCAUCCUUGGCUA   1630 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).
2	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).