Search result

BaseInfo

ncRNA ID	bna-miR390a
Species	Brassica napus
Class	miRNA
Genome position	EM:DX059137:530-673 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	92 - AAGCUCAGGAGGGAUAGCGCC - 112
Stem-loop(if miRNA)	-   UGU   U      U       A         G           UGUCUCACCG    UAUAA AUUUCAGG UGA   AGU GAGAAG AGCUGUA AGCUCAGGA GGAUAGCGCCA          GUAC     A |||||||| |||   ||| |||||| ||||||| ||||||||| |||||||||||          |||| UAGAGUCC AUU   UCG UUCUUC UCGGUAU UUGAGUCCU CCUAUCGCGGU          UAUG     A         U   --U   -      U       C         A           --UAUAUCUA    UUUGU
Stem-loop sequence	AUUUCAGGUGAUGUAGUUGAGAAGUAGCUGUAAAGCUCAGGAGGGAUAGCGCCAUGUCUCACCGGUACUAUAAAAUGUUUGUAUAUCUAUAUUGGCGCUAUCCAUCCUGAGUUCUAUGGCUUCUUCUUGCUUUUAUCCUGAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013810883.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X3, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget
XM_013842905.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1567   AACGCUAACCCUCCUGAUCUU   1587 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106402213), mRNA	cytochrome P450 78A6-like(LOC106402213)	coding protein	psRNATarget
XM_013841739.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1567   AACGCUAACCCUCCUGAUCUU   1587 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106401261), mRNA	cytochrome P450 78A6-like(LOC106401261)	coding protein	psRNATarget
XM_013810882.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X2, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget
XM_013810884.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X4, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget
XM_013810879.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X1, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).