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BaseInfo

ncRNA ID bna-miR2111a-3p
Species Brassica napus
Class miRNA
Genome position EM:DX056967:176-326 [-]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 23 - GUCCUCGGGAUGCGGAUUACC - 43
Stem-loop(if miRNA) GAUGACAA    U        CC                    -UUU      -UGAUUAU       ---AC    C
        GUAU GGUGAGGA  GGGUAAUCUGCAUCCUGAGG    AAAGCU        ACGCAUA     AUGC G
        |||| ||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||
        CAUA UCAUUCCU  UCCAUUAGGCGUAGGGCUCC    UUUCGA        UGUGUAU     UACG A
-GCACAUG    -        UC                    UGAU      UAAGAUUU       CAAUA    C
Stem-loop sequence GAUGACAAGUAUUGGUGAGGACCGGGUAAUCUGCAUCCUGAGGUUUAAAGCUUGAUUAUACGCAUAACAUGCCGACGCAUAUAACUAUGUGUUUUAGAAUAGCUUUUAGUCCUCGGGAUGCGGAUUACCUCUUCCUUACUAUACGUACACG

Reference

1 PMID:19465578
"Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing";
Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR;
Plant Physiol. 150:1541-1555(2009).
2 PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes";
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ;
Plant Physiol. 158:813-823(2012).