Search result

BaseInfo

ncRNA ID	bna-miR2111a-5p
Species	Brassica napus
Class	miRNA
Genome position	EM:DX056967:176-326 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	105 - UAAUCUGCAUCCUGAGGUUUA - 125
Stem-loop(if miRNA)	GAUGACAA    U        CC                    -UUU      -UGAUUAU       ---AC    C         GUAU GGUGAGGA  GGGUAAUCUGCAUCCUGAGG    AAAGCU        ACGCAUA     AUGC G         |||| ||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||         CAUA UCAUUCCU  UCCAUUAGGCGUAGGGCUCC    UUUCGA        UGUGUAU     UACG A -GCACAUG    -        UC                    UGAU      UAAGAUUU       CAAUA    C
Stem-loop sequence	GAUGACAAGUAUUGGUGAGGACCGGGUAAUCUGCAUCCUGAGGUUUAAAGCUUGAUUAUACGCAUAACAUGCCGACGCAUAUAACUAUGUGUUUUAGAAUAGCUUUUAGUCCUCGGGAUGCGGAUUACCUCUUCCUUACUAUACGUACACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013814807.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:236   CAGACCUCAGGAUGCAGAUUA   256 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X3, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013789225.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:287   CAGACCUCAGGAUGCAGAUUA   307 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106349282), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106349282)	coding protein	psRNATarget
XM_013814805.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:296   CAGACCUCAGGAUGCAGAUUA   316 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013814806.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:344   CAGACCUCAGGAUGCAGAUUA   364 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X2, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013865485.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:301   UAAACAUCAGGAUGCAGAUUA   321 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106424736), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106424736)	coding protein	psRNATarget
XM_013825745.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:295   UAAACAUCAGGAUGCAGAUUA   315 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106385848), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106385848)	coding protein	psRNATarget

Reference

1	PMID:19465578 "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"; Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR; Plant Physiol. 150:1541-1555(2009).
2	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).