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BaseInfo

ncRNA ID bna-miR172b
Species Brassica napus
Class miRNA
Genome position EM:DX011558:214-308 [-]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 10 - GGAAUCUUGAUGAUGCUGCAU - 30
Stem-loop(if miRNA)        A                     A      A  U  UUUU
UAGUUGC GAUGCAGCAUCAUUAAGAUUC CAAGAG UG GG    C
||||||| ||||||||||||||||||||| |||||| || ||    U
AUCAACG CUACGUCGUAGUAGUUCUAAG GUUCUC GC CU    U
       A                     G      C  U  UUUG
Stem-loop sequence UAGUUGCAGAUGCAGCAUCAUUAAGAUUCACAAGAGAUGUGGUUUUCUUGUUUUCUCGCCUCUUGGGAAUCUUGAUGAUGCUGCAUCAGCAACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013853169.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1074   UUGCAGCAUCAUCAGGAUUCC   1094

1.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor SMZ (LOC106412263), mRNA AP2-like ethylene-responsive transcription factor SMZ(LOC106412263) coding protein psRNATarget
XM_013881405.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1119   UUGCAGCAUCAUCAGGAUUCC   1139

1.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor SMZ (LOC106439870), mRNA AP2-like ethylene-responsive transcription factor SMZ(LOC106439870) coding protein psRNATarget
XM_013852445.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1302   AUGCAGCAUCAUCAGGAUUCU   1322

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106411646), transcript variant X3, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106411646) coding protein psRNATarget
XM_013829973.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1541   AUGCAGCAUCAUCAGGAUUCU   1561

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106389655), transcript variant X3, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106389655) coding protein psRNATarget
XM_013852444.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1219   AUGCAGCAUCAUCAGGAUUCU   1239

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106411646), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106411646) coding protein psRNATarget
XM_013787005.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1392   AUGCAGCAUCAUCAGGAUUCU   1412

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106347473), mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106347473) coding protein psRNATarget
XM_013859428.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1578   AUGCAGCAUCAUCAGGAUUCU   1598

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106418682) coding protein psRNATarget
XM_013825702.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1427   AUGCAGCAUCAUCAGGAUUCU   1447

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106385800), mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106385800) coding protein psRNATarget
XM_013859430.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1362   AUGCAGCAUCAUCAGGAUUCU   1382

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X4, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106418682) coding protein psRNATarget
XM_013829972.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1417   AUGCAGCAUCAUCAGGAUUCU   1437

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106389655), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106389655) coding protein psRNATarget
XM_013852443.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1417   AUGCAGCAUCAUCAGGAUUCU   1437

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106411646), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106411646) coding protein psRNATarget
XM_013859429.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1470   AUGCAGCAUCAUCAGGAUUCU   1490

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X3, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106418682) coding protein psRNATarget
XM_013829971.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1474   AUGCAGCAUCAUCAGGAUUCU   1494

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106389655), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106389655) coding protein psRNATarget
XM_013859427.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1582   AUGCAGCAUCAUCAGGAUUCU   1602

2.5 PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE2(LOC106418682) coding protein psRNATarget
XM_013787958.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:695   CUGCAGCAUCAUCAGGAUUCU   715

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348249), partial mRNA floral homeotic protein APETALA 2-like(LOC106348249) coding protein psRNATarget
XM_013864084.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:947   CUGCAGCAUCAUCAGGAUUCU   967

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2 (LOC106423299), partial mRNA floral homeotic protein APETALA 2(LOC106423299) coding protein psRNATarget
HQ637468.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1178   CUGCAGCAUCAUCAGGAUUCU   1198

2.5 Brassica napus APETALA2 (APETALA2) mRNA, complete cds NA coding protein psRNATarget
XM_013793466.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1078   CUGCAGCAUCAUCAGGAUUCU   1098

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106353677), mRNA floral homeotic protein APETALA 2-like(LOC106353677) coding protein psRNATarget
XM_013887071.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1339   CUGCAGCAUCAUCAGGAUUCU   1359

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106445506), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC106445506) coding protein psRNATarget
XM_013867509.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1371   CUGCAGCAUCAUCAGGAUUCU   1391

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106426778), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC106426778) coding protein psRNATarget
XM_013867508.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1375   CUGCAGCAUCAUCAGGAUUCU   1395

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106426778), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC106426778) coding protein psRNATarget
XM_013787956.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1373   CUGCAGCAUCAUCAGGAUUCU   1393

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X4, mRNA floral homeotic protein APETALA 2-like(LOC106348248) coding protein psRNATarget
XM_013787955.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1373   CUGCAGCAUCAUCAGGAUUCU   1393

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X3, mRNA floral homeotic protein APETALA 2-like(LOC106348248) coding protein psRNATarget
XM_013787954.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1376   CUGCAGCAUCAUCAGGAUUCU   1396

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC106348248) coding protein psRNATarget
XM_013787953.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1376   CUGCAGCAUCAUCAGGAUUCU   1396

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC106348248) coding protein psRNATarget
XM_013852206.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1360   CUGCAGCAUCAUCAGGAUUCU   1380

2.5 PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106411443), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC106411443) coding protein psRNATarget
XM_013879462.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1348   CAGCAGCAUCAUCAGGAUUCU   1368

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106438341), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106438341) coding protein psRNATarget
XM_013879461.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1408   CAGCAGCAUCAUCAGGAUUCU   1428

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106438341), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106438341) coding protein psRNATarget
XM_013878360.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1391   CAGCAGCAUCAUCAGGAUUCU   1411

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106437467), mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106437467) coding protein psRNATarget
XM_013798426.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1484   CAGCAGCAUCAUCAGGAUUCU   1504

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358596), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106358596) coding protein psRNATarget
XM_013798423.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1484   CAGCAGCAUCAUCAGGAUUCU   1504

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358595), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106358595) coding protein psRNATarget
XM_013798425.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1530   CAGCAGCAUCAUCAGGAUUCU   1550

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358596), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106358596) coding protein psRNATarget
XM_013798422.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  **||||||||||||=|||||=
targets:1530   CAGCAGCAUCAUCAGGAUUCU   1550

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358595), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC106358595) coding protein psRNATarget
XM_013836531.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*||||||||||||||=
targets:167   UUGUAACAUCAUCAAGAUUCU   187

3.0 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396197), transcript variant X2, mRNA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396197) coding protein psRNATarget
XM_013836530.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*||||||||||||||=
targets:167   UUGUAACAUCAUCAAGAUUCU   187

3.0 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396197), transcript variant X1, mRNA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396197) coding protein psRNATarget
XM_013892868.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*||||||||||||||=
targets:184   UUGUAACAUCAUCAAGAUUCU   204

3.0 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106451018), transcript variant X1, mRNA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106451018) coding protein psRNATarget
XM_013836554.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*||||||||||||||=
targets:190   UUGUAACAUCAUCAAGAUUCU   210

3.0 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396217), transcript variant X1, mRNA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396217) coding protein psRNATarget
XM_013892869.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*||||||||||||||=
targets:183   UUGUAACAUCAUCAAGAUUCU   203

3.0 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106451018), transcript variant X2, mRNA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106451018) coding protein psRNATarget
XM_013836556.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*||||||||||||||=
targets:189   UUGUAACAUCAUCAAGAUUCU   209

3.0 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396217), transcript variant X2, mRNA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396217) coding protein psRNATarget

Reference

1 PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes";
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ;
Plant Physiol. 158:813-823(2012).
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