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BaseInfo

ncRNA ID	bna-miR171g
Species	Brassica napus
Class	miRNA
Genome position	EM:DU106747:664-743 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	22
Mature sequence(if miRNA)	58 - UGAUUGAGCCGCGCCAAUAUCU - 79
Stem-loop(if miRNA)	--         C       C      UACACACGU    UAUGC   GAUAUUGGC UGGUUCA UCAGAU         ACUA     A   ||||||||| ||||||| ||||||         ||||   CUAUAACCG GCCGAGU AGUCUA         UGAU     U CU         C       U      --------U    UCUCU
Stem-loop sequence	GAUAUUGGCCUGGUUCACUCAGAUUACACACGUACUAUAUGCAUUCUCUUAGUUAUCUGAUUGAGCCGCGCCAAUAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013852286.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   =||||||||||||||||||||| targets:813   GGAUAUUGGCGCGGCUCAAUCA   834 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 22 (LOC106411510), mRNA	scarecrow-like protein 22(LOC106411510)	coding protein	psRNATarget
XM_013879337.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   =||||||||||||||||||||| targets:885   GGAUAUUGGCGCGGCUCAAUCA   906 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106438236), mRNA	scarecrow-like protein 27(LOC106438236)	coding protein	psRNATarget
XM_013832628.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   =||||||||||||||||||||| targets:906   GGAUAUUGGCGCGGCUCAAUCA   927 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 22 (LOC106391896), mRNA	scarecrow-like protein 22(LOC106391896)	coding protein	psRNATarget
XM_013841612.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   =||||||||||||||||||||| targets:878   GGAUAUUGGCGCGGCUCAAUCA   899 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 6 (LOC106401154), mRNA	scarecrow-like protein 6(LOC106401154)	coding protein	psRNATarget
XM_013872928.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   =||||||||||||||||||||| targets:1137   GGAUAUUGGCGCGGCUCAAUCA   1158 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106432091), mRNA	scarecrow-like protein 27(LOC106432091)	coding protein	psRNATarget
XM_013792921.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   =||||||||||||||||||||| targets:1221   GGAUAUUGGCGCGGCUCAAUCA   1242 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106353214), mRNA	scarecrow-like protein 27(LOC106353214)	coding protein	psRNATarget
XM_013830007.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   *|||||||*|*||||||||||| targets:482   UGAUAUUGUCACGGCUCAAUCA   503 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 15 (LOC106389684), mRNA	scarecrow-like protein 15(LOC106389684)	coding protein	psRNATarget
XM_013797403.1	ncRNA:22   UCUAUAACCGCGCCGAGUUAGU   1   *|||||||*|*||||||||||| targets:607   UGAUAUUGUCACGGCUCAAUCA   628 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 15 (LOC106357715), mRNA	scarecrow-like protein 15(LOC106357715)	coding protein	psRNATarget

Reference

1	PMID:17367786 "Computational identification of novel microRNAs and targets in Brassica napus"; Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM; FEBS Lett. 581:1464-1474(2007).
2	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).