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BaseInfo

ncRNA ID	bna-miR393
Species	Brassica napus
Class	miRNA
Genome position	EM:DU101699:116-242 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	1 - UCCAAAGGGAUCGCAUUGAUC - 21
Stem-loop(if miRNA)	A            U     ---U   C    ---------UG    -   CCCGAAUAAUUAUUUU UCC AAGGGAUCGCAU GAUCC    AAU AAGC           AGUU AUU                A ||| |||||||||||| |||||    ||| ||||           |||| |||                A AGG UUCUCUAGCGUA CUAGG    UUG UUCG           AAAG UAG                U    C            -     CCUU   C    UUUUAAAAAAA    A   AAAGGUAACUCUUUUU
Stem-loop sequence	UCCAAAGGGAUCGCAUUGAUCCUAAUCAAGCUGAGUUAUUCCCGAAUAAUUAUUUUAAUUUUUUCUCAAUGGAAAGAUAGAAAAAAAAAAUUUUGCUUCGUUUUCCGGAUCAUGCGAUCUCUUCGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013841917.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   ||*|||||||||||||||||| targets:1912   GAACAAUGCGAUCCCUUUGGA   1932 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3 (LOC106401406), mRNA	protein AUXIN SIGNALING F-BOX 3(LOC106401406)	coding protein	psRNATarget
XM_013846490.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   ||*|||||||||||||||||| targets:1906   GAACAAUGCGAUCCCUUUGGA   1926 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3-like (LOC106405934), mRNA	protein AUXIN SIGNALING F-BOX 3-like(LOC106405934)	coding protein	psRNATarget
XM_013808066.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   ||*|||||||||||||||||| targets:1907   GAACAAUGCGAUCCCUUUGGA   1927 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3-like (LOC106368168), mRNA	protein AUXIN SIGNALING F-BOX 3-like(LOC106368168)	coding protein	psRNATarget
XM_013853452.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   ||*|||||||||||||||||| targets:1980   GAACAAUGCGAUCCCUUUGGA   2000 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3-like (LOC106412544), mRNA	protein AUXIN SIGNALING F-BOX 3-like(LOC106412544)	coding protein	psRNATarget
XM_013787317.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|||||||||||||||||| targets:1782   AAACAAUGCGAUCCCUUUGGA   1802 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 2-like (LOC106347727), transcript variant X2, mRNA	protein AUXIN SIGNALING F-BOX 2-like(LOC106347727)	coding protein	psRNATarget
XM_013787316.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|||||||||||||||||| targets:1914   AAACAAUGCGAUCCCUUUGGA   1934 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 2-like (LOC106347727), transcript variant X1, mRNA	protein AUXIN SIGNALING F-BOX 2-like(LOC106347727)	coding protein	psRNATarget
XM_013842917.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|||||||||||||||||| targets:1945   AAACAAUGCGAUCCCUUUGGA   1965 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 2 (LOC106402220), mRNA	protein AUXIN SIGNALING F-BOX 2(LOC106402220)	coding protein	psRNATarget
XM_013801859.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|||||||||||||||||| targets:1993   AAACAAUGCGAUCCCUUUGGA   2013 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3-like (LOC106362045), mRNA	protein AUXIN SIGNALING F-BOX 3-like(LOC106362045)	coding protein	psRNATarget
XM_013822392.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|||||||||||||||||| targets:2319   AAACAAUGCGAUCCCUUUGGA   2339 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3-like (LOC106382373), transcript variant X2, mRNA	protein AUXIN SIGNALING F-BOX 3-like(LOC106382373)	coding protein	psRNATarget
XM_013822391.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|||||||||||||||||| targets:2391   AAACAAUGCGAUCCCUUUGGA   2411 Target Full Sequence	1.0	PREDICTED: Brassica napus protein AUXIN SIGNALING F-BOX 3-like (LOC106382373), transcript variant X1, mRNA	protein AUXIN SIGNALING F-BOX 3-like(LOC106382373)	coding protein	psRNATarget
XM_013833103.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|*|||||||||||||||| targets:1527   AAACCAUGCGAUCCCUUUGGA   1547 Target Full Sequence	2.0	PREDICTED: Brassica napus GRR1-like protein 1 (LOC106392292), mRNA	GRR1-like protein 1(LOC106392292)	coding protein	psRNATarget
XM_013826070.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   *|*|*|||||||||||||||| targets:1526   AAACCAUGCGAUCCCUUUGGA   1546 Target Full Sequence	2.0	PREDICTED: Brassica napus GRR1-like protein 1 (LOC106386190), mRNA	GRR1-like protein 1(LOC106386190)	coding protein	psRNATarget
XM_013821738.1	ncRNA:21   CUAGUUACGCUAGGGAAACCU   1   |=|||=*|||||||||||||* targets:371   GGUCAGAGCGAUCCCUUUGGC   391 Target Full Sequence	3.0	PREDICTED: Brassica napus transcription factor bHLH77-like (LOC106381806), mRNA	transcription factor bHLH77-like(LOC106381806)	coding protein	psRNATarget

Reference

1	PMID:17367786 "Computational identification of novel microRNAs and targets in Brassica napus"; Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM; FEBS Lett. 581:1464-1474(2007).