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BaseInfo

ncRNA ID	bna-miR399a
Species	Brassica napus
Class	miRNA
Genome position	EM:CX190537:26-127 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	81 - UGCCAAAGGAGAUUUGCCCGG - 101
Stem-loop(if miRNA)	ACA     A       A        A   -      UU     UU    UCU    GGGCA GAUCUCU UUGGCAGA AAC CAUUAC  AGAUC  UGCA   C    ||||| ||||||| |||||||| ||| ||||||  |||||  ||||    CCCGU UUAGAGG AACCGUCU UUG GUGAUG  UUUAG  ACGU   U UGG     -       A        C   A      --     UU    CUU
Stem-loop sequence	ACAGGGCAAGAUCUCUAUUGGCAGAAAACCAUUACUUAGAUCUUUGCAUCUCUUUCUGCAUUGAUUUGUAGUGAGUUCUCUGCCAAAGGAGAUUUGCCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==||||||||||||||||||| targets:496   UUGGGCAAAUCUCCUUUGGCA   516 Target Full Sequence	0.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*||||||||||||||||||| targets:420   UAGGGCAAAUCUCCUUUGGCA   440 Target Full Sequence	0.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==*|||||||||||||||||| targets:672   UUCGGCAAAUCUCCUUUGGCA   692 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |*|*||||||||||||||||| targets:791   CAGAGCAAAUCUCCUUUGGCA   811 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*|||||*||||||||||||| targets:591   UGGGGCAUAUCUCCUUUGGCA   611 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==*|||||||||||||||||| targets:595   UUCGGCAAAUCUCCUUUGGCA   615 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |*|*||||||||||||||||| targets:714   CAGAGCAAAUCUCCUUUGGCA   734 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*|||||*||||||||||||| targets:514   UGGGGCAUAUCUCCUUUGGCA   534 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCC-CGUUUAGAGGAAACCGU   1   =|||-||||||||||||||||| targets:733   UCGGAGCAAAUCUCCUUUGGCA   754 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCC-CGUUUAGAGGAAACCGU   1   =|||-||||||||||||||||| targets:656   UCGGAGCAAAUCUCCUUUGGCA   677 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget

Reference

1	PMID:17367786 "Computational identification of novel microRNAs and targets in Brassica napus"; Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM; FEBS Lett. 581:1464-1474(2007).