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BaseInfo

ncRNA ID ath-miR844-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:9942151-9942335 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 111 - UGGUAAGAUUGCUUAUAAGCU - 131
Stem-loop(if miRNA) -------GGAAGGA    UUU     UG    AAU  AUCUUUU                A         U           G   CUUG    U   U
              GAUG   GCAGU  GUUU   GA       ACAUUGAAGAGAAGGA UGGUAAGAU GCUUAUAAGCU GAU    AGGG GAG G
              ||||   |||||  ||||   ||       |||||||||||||||| ||||||||| ||||||||||| |||    |||| |||
              CUAU   CGUCG  CAGG   CU       UGUAACUUUUCUUCUU AUCAUUCUA CGAAUAUUCGG UUA    UCUU CUC G
UGUUUACUAGUGGA    UUU     --    AAU  -----GU                G         C           G   CGCA    -   U
Stem-loop sequence GGAAGGAGAUGUUUGCAGUUGGUUUAAUGAAUCUUUUACAUUGAAGAGAAGGAAUGGUAAGAUUGCUUAUAAGCUGGAUCUUGAGGGUGAGUGGUCUCUUCUACGCAUUGGGCUUAUAAGCCAUCUUACUAGUUCUUCUUUUCAAUGUUGUCUAAGGACGCUGCUUUUAUCAGGUGAUCAUUUGU

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).