ncRNA ID | ath-miR844-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:9942151-9942335 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 111 - UGGUAAGAUUGCUUAUAAGCU - 131 |
Stem-loop(if miRNA) |
-------GGAAGGA    UUU     UG    AAU  AUCUUUU                A         U           G   CUUG    U   U               GAUG   GCAGU  GUUU   GA       ACAUUGAAGAGAAGGA UGGUAAGAU GCUUAUAAGCU GAU    AGGG GAG G               ||||   |||||  ||||   ||       |||||||||||||||| ||||||||| ||||||||||| |||    |||| |||               CUAU   CGUCG  CAGG   CU       UGUAACUUUUCUUCUU AUCAUUCUA CGAAUAUUCGG UUA    UCUU CUC G UGUUUACUAGUGGA    UUU     --    AAU  -----GU                G         C           G   CGCA    -   U |
Stem-loop sequence | GGAAGGAGAUGUUUGCAGUUGGUUUAAUGAAUCUUUUACAUUGAAGAGAAGGAAUGGUAAGAUUGCUUAUAAGCUGGAUCUUGAGGGUGAGUGGUCUCUUCUACGCAUUGGGCUUAUAAGCCAUCUUACUAGUUCUUCUUUUCAAUGUUGUCUAAGGACGCUGCUUUUAUCAGGUGAUCAUUUGU |
1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |