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BaseInfo

ncRNA ID bna-miR161
Species Brassica napus
Class miRNA
Genome position EM:BZ512955:329-463 [+]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 14 - UCAAUGCACUGAAAGUGACUA - 34
Stem-loop(if miRNA) --     U   UC          C              C    AUUUGUUUUUA   UUUUGCUCUCAU
  UUUAU GCU  GAUCAAUGCA UGAAAGUGACUACA CAGG           AGU            C
  ||||| |||  |||||||||| |||||||||||||| ||||           |||
  AGGUA CGA  CUAGUUGCGU ACUUUCACUGAUGU GUCU           AGU            U
AA     -   UA          A              A    --CCGAUUAAA   AGAAAUAGUAUA
Stem-loop sequence UUUAUUGCUUCGAUCAAUGCACUGAAAGUGACUACACCAGGAUUUGUUUUUAAGUUUUUGCUCUCAUCUAUAUGAUAAAGAUGAAAAUUAGCCUCUGAUGUAGUCACUUUCAAUGCGUUGAUCAUAGCAUGGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013841640.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |*||||||||||||||*||||
targets:1153   UUGUCACUUUCAGUGCUUUGA   1173

1.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At1g12620-like (LOC106401178), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g12620-like(LOC106401178) coding protein psRNATarget
XM_013841641.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |*||||||||||||||*||||
targets:1153   UUGUCACUUUCAGUGCUUUGA   1173

1.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At1g12620-like (LOC106401178), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g12620-like(LOC106401178) coding protein psRNATarget
XM_013820766.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |**|||||||||||||=||||
targets:1109   UCAUCACUUUCAGUGCGUUGA   1129

2.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At1g12620-like (LOC106380919), mRNA pentatricopeptide repeat-containing protein At1g12620-like(LOC106380919) coding protein psRNATarget
FJ455099.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |*||*||||||||||=|||||
targets:953   UUGUAACUUUCAGUGUAUUGA   973

2.5 Brassica napus restorer-of-fertility (PPR-B-L1) mRNA, partial cds NA coding protein psRNATarget
XM_013830688.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |*||*||||||||||=|||||
targets:1005   UUGUAACUUUCAGUGUAUUGA   1025

2.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At1g64100-like (LOC106390267), mRNA pentatricopeptide repeat-containing protein At1g64100-like(LOC106390267) coding protein psRNATarget
XM_013864640.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |**|||||||||||||*||||
targets:374   UCAUCACUUUCAGUGCUUUGA   394

2.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC106423886), partial mRNA pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC106423886) coding protein psRNATarget
XM_013790581.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |**|||||||||||||*||||
targets:1037   UCAUCACUUUCAGUGCUUUGA   1057

2.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC106350729), mRNA pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC106350729) coding protein psRNATarget
XM_013809254.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |**|||||||||||||*||||
targets:1121   UCAUCACUUUCAGUGCUUUGA   1141

2.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At1g12620-like (LOC106369154), mRNA pentatricopeptide repeat-containing protein At1g12620-like(LOC106369154) coding protein psRNATarget
XM_013876513.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |*||||*|||*||||||||||
targets:1416   UUGUCAAUUUGAGUGCAUUGA   1436

2.5 PREDICTED: Brassica napus probable cyclic nucleotide-gated ion channel 12 (LOC106435604), mRNA probable cyclic nucleotide-gated ion channel 12(LOC106435604) coding protein psRNATarget
XM_013822395.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  |*|||||*||||||||*||||
targets:1092   UCGUCACGUUCAGUGCCUUGA   1112

2.5 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC106382376), mRNA pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC106382376) coding protein psRNATarget
XM_013860153.1
ncRNA:21   AUCAGU-GAAAGUCACGUAACU   1
  ***|||-|||||||||||||||
targets:189   AUCUCAGCUUUCAGUGCAUUGA   210

3.0 PREDICTED: Brassica napus cyclin-U4-2-like (LOC106419379), mRNA cyclin-U4-2-like(LOC106419379) coding protein psRNATarget
XM_013891324.1
ncRNA:21   AUCAGU-GAAAGUCACGUAACU   1
  ***|||-|||||||||||||||
targets:181   AUCUCAGCUUUCAGUGCAUUGA   202

3.0 PREDICTED: Brassica napus cyclin-U4-2-like (LOC106449585), mRNA cyclin-U4-2-like(LOC106449585) coding protein psRNATarget
XM_013885247.1
ncRNA:21   AUCAGU-GAAAGUCACGUAACU   1
  ***|||-|||||||||||||||
targets:181   AUCUCAGCUUUCAGUGCAUUGA   202

3.0 PREDICTED: Brassica napus cyclin-U4-2-like (LOC106443700), mRNA cyclin-U4-2-like(LOC106443700) coding protein psRNATarget
XM_013827845.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  *||*||*|||||||||||||*
targets:626   GAGACAGUUUCAGUGCAUUGU   646

3.0 PREDICTED: Brassica napus uncharacterized LOC106387906 (LOC106387906), mRNA uncharacterized LOC106387906(LOC106387906) coding protein psRNATarget
XM_013827397.1
ncRNA:21   AUCAGUGAAAGUCACGUAACU   1
  *||*||*|||||||||||||*
targets:643   GAGACAGUUUCAGUGCAUUGU   663

3.0 PREDICTED: Brassica napus uncharacterized LOC106387527 (LOC106387527), mRNA uncharacterized LOC106387527(LOC106387527) coding protein psRNATarget

Reference

1 PMID:17659282
"Cloning and characterization of microRNAs from Brassica napus";
Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL;
FEBS Lett. 581:3848-3856(2007).
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