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BaseInfo

ncRNA ID bna-miR6034
Species Brassica napus
Class miRNA
Genome position EM:BZ504827:134-260 [-]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 23 - UCUGAUGUAUAUAGCUUUGGG - 43
Stem-loop(if miRNA)          C                        C         U G             UA
AUAUACUCU AAGCAUAUCAACUCCGAAGCUAUA ACAUCGGAU U UCCGACAUUGUAU  G
||||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||  A
UAUAUGAGA UUCGUAUAGUUGGGGUUUCGAUAU UGUAGUCUA A AGGUUGUAACAUA  C
         A                        A         C G             UA
Stem-loop sequence AUAUACUCUCAAGCAUAUCAACUCCGAAGCUAUACACAUCGGAUUUGUCCGACAUUGUAUUAGACAUAUACAAUGUUGGAGACAUCUGAUGUAUAUAGCUUUGGGGUUGAUAUGCUUAAGAGUAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013889578.1
ncRNA:21   GGGUUUCGAUAUAUGUAGUCU   1
  ==|||||*||*||||||||||
targets:891   UUCAAAGGUAGAUACAUCAGA   911

2.5 PREDICTED: Brassica napus ribosomal protein S2, mitochondrial (LOC106447611), mRNA ribosomal protein S2, mitochondrial(LOC106447611) coding protein psRNATarget

Reference

1 PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes";
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ;
Plant Physiol. 158:813-823(2012).