ncRNA ID | ath-miR5016 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:9919984-9920197 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 169 - UUCUUGUGGAUUCCUUGGAAA - 189 |
Stem-loop(if miRNA) |
    AU        C   GU      CUA   A          C        C   -     GU      A       A                 G    ACAAAG GGAG  UUUGUUCC UGA  UUCAGU   CAA GAAUCCAUAA GAUGACUU GUU UUUCG  CGUUAA UUAGGUA AUAUUUUUGACCAUAUC AAAU      U ||||  |||||||| |||  ||||||   ||| |||||||||| |||||||| ||| |||||  |||||| ||||||| ||||||||||||||||| |||| UCUU  AGACAAGG ACU  AAGUUA   GUU CUUAGGUGUU UUACUGAA CAG AAGGC  GUAAUU AGUCCAU UAUAAAAACUGGUGUAG UUUA      C     GU        A   GU      AAG   C          C        A   U     AG      -       C                 A    CACCUA |
Stem-loop sequence | GGAGAUUUUGUUCCCUGAGUUUCAGUCUACAAAGAAUCCAUAACGAUGACUUCGUUUUUCGGUCGUUAAAUUAGGUAAAUAUUUUUGACCAUAUCGAAAUACAAAGUCAUCCACAUUUAGAUGUGGUCAAAAAUAUCUACCUGAUUAAUGGACGGAAUGACAAAGUCAUUCUUGUGGAUUCCUUGGAAAUUGAAUGUCAAGGAACAGAUGUUCU |
1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |