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BaseInfo

ncRNA ID ath-miR5016
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:9919984-9920197 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 169 - UUCUUGUGGAUUCCUUGGAAA - 189
Stem-loop(if miRNA)     AU        C   GU      CUA   A          C        C   -     GU      A       A                 G    ACAAAG
GGAG  UUUGUUCC UGA  UUCAGU   CAA GAAUCCAUAA GAUGACUU GUU UUUCG  CGUUAA UUAGGUA AUAUUUUUGACCAUAUC AAAU      U
||||  |||||||| |||  ||||||   ||| |||||||||| |||||||| ||| |||||  |||||| ||||||| ||||||||||||||||| ||||
UCUU  AGACAAGG ACU  AAGUUA   GUU CUUAGGUGUU UUACUGAA CAG AAGGC  GUAAUU AGUCCAU UAUAAAAACUGGUGUAG UUUA      C
    GU        A   GU      AAG   C          C        A   U     AG      -       C                 A    CACCUA
Stem-loop sequence GGAGAUUUUGUUCCCUGAGUUUCAGUCUACAAAGAAUCCAUAACGAUGACUUCGUUUUUCGGUCGUUAAAUUAGGUAAAUAUUUUUGACCAUAUCGAAAUACAAAGUCAUCCACAUUUAGAUGUGGUCAAAAAUAUCUACCUGAUUAAUGGACGGAAUGACAAAGUCAUUCUUGUGGAUUCCUUGGAAAUUGAAUGUCAAGGAACAGAUGUUCU

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).