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BaseInfo

ncRNA ID	bna-miR395b
Species	Brassica napus
Class	miRNA
Genome position	EM:BZ089005:379-467 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - CUGAAGUGUUUGGGGGAACUC - 26
Stem-loop(if miRNA)	UA         UG         U     A   C    AUUU UCC  GAGUUCCUC  AGCACUUCA UGGAG UAC GUUU    U |||  |||||||||  ||||||||| ||||| ||| ||||    C AGG  CUCAAGGGG  UUGUGAAGU ACCUU AUG UAAA    U    UC         GU         C     -   -    ACUA
Stem-loop sequence	UCCUAGAGUUCCUCUGAGCACUUCAUUGGAGAUACCGUUUAUUUUCUAUCAAAAUGUAUUCCACUGAAGUGUUUGGGGGAACUCCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001315829.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||||||=||||||||||||* targets:338   GAGUUCCUCCAAACACUUCAU   358 Target Full Sequence	2.0	Brassica napus ATP sulfurylase 4, chloroplastic (LOC106410303), mRNA	ATP sulfurylase 4, chloroplastic(LOC106410303)	coding protein	psRNATarget
FJ626850.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||||||=||||||||||||* targets:338   GAGUUCCUCCAAACACUUCAU   358 Target Full Sequence	2.0	Brassica napus ATP sulfurylase 4 mRNA, complete cds	NA	coding protein	psRNATarget
XM_013888737.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1095   GAGUGCCUCCAAACACUUCAG   1115 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106446918 (LOC106446918), mRNA	uncharacterized LOC106446918(LOC106446918)	coding protein	psRNATarget
NM_001315588.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:107   AAGUUCUCCCAAACACUUCAA   127 Target Full Sequence	2.0	Brassica napus sulfate transporter 2.1 (LOC106383119), mRNA	sulfate transporter 2.1(LOC106383119)	coding protein	psRNATarget
FJ471539.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:107   AAGUUCUCCCAAACACUUCAA   127 Target Full Sequence	2.0	Brassica napus low affinity sulfate transporter Bnst2-1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_013859223.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:109   AAGUUCUCCCAAACACUUCAA   129 Target Full Sequence	2.0	PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106418501), mRNA	sulfate transporter 2.1-like(LOC106418501)	coding protein	psRNATarget
XM_013812709.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:129   AAGUUCUCCCAAACACUUCAA   149 Target Full Sequence	2.0	PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106372486), mRNA	sulfate transporter 2.1-like(LOC106372486)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).