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BaseInfo

ncRNA ID	bna-miR2111b-5p
Species	Brassica napus
Class	miRNA
Genome position	EM:BH986382:375-493 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - UAAUCUGCAUCCUGAGGUUUA - 40
Stem-loop(if miRNA)	GCACUUGAU      CU         C         U        --AC   G      G          GAGGAA  GGUAAUCUG AUCCUGAGG UUAAAAAU    AUA GCACAU C          ||||||  ||||||||| ||||||||| ||||||||    ||| ||||||          UUCCUU  CCAUUAGAC UAGGGCUCC AAUUUUUG    UAU UGUGUA A -AAGUCAUU      CU         A         U        AUAU   G      A
Stem-loop sequence	GCACUUGAUGAGGAACUGGUAAUCUGCAUCCUGAGGUUUAAAAAUACAUAGGCACAUGCAAAUGUGUGUAUUAUAGUUUUUAAUCCUCGGGAUACAGAUUACCUCUUCCUUUUACUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013814807.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:236   CAGACCUCAGGAUGCAGAUUA   256 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X3, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013789225.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:287   CAGACCUCAGGAUGCAGAUUA   307 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106349282), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106349282)	coding protein	psRNATarget
XM_013814805.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:296   CAGACCUCAGGAUGCAGAUUA   316 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013814806.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:344   CAGACCUCAGGAUGCAGAUUA   364 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X2, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013865485.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:301   UAAACAUCAGGAUGCAGAUUA   321 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106424736), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106424736)	coding protein	psRNATarget
XM_013825745.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:295   UAAACAUCAGGAUGCAGAUUA   315 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106385848), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106385848)	coding protein	psRNATarget

Reference

1	PMID:19465578 "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"; Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR; Plant Physiol. 150:1541-1555(2009).