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BaseInfo

ncRNA ID	bna-miR2111c
Species	Brassica napus
Class	miRNA
Genome position	EM:BH979745:325-460 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	99 - UAAUCUGCAUCCUGGGGUUUA - 119
Stem-loop(if miRNA)	-UAUUG       CC                        --C G    AG        ---AA      G       GUGAGGA  GGGUAAUCUGCAUCCUGGGGUUUA   G UUUA  AACACACA     GUGUGC U       |||||||  ||||||||||||||||||||||||   | ||||  ||||||||     ||||||       CAUUCCU  UCCAUUAGGCGUAGGACUCCAGAU   C AAAU  UUGUGUGU     UAUACG A GCAUAA       UC                        UUU G    GA        AUAUG      U
Stem-loop sequence	UAUUGGUGAGGACCGGGUAAUCUGCAUCCUGGGGUUUACGGUUUAAGAACACACAAAGUGUGCGUAUGCAUAUGUAUAUGUGUGUUAGUAAAGCUUUUAGACCUCAGGAUGCGGAUUACCUCUUCCUUACAAUACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013814807.1	ncRNA:21   AUUUGGGGUCCUACGUCUAAU   1   *|=|||=|||||||||||||| targets:236   CAGACCUCAGGAUGCAGAUUA   256 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X3, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013789225.1	ncRNA:21   AUUUGGGGUCCUACGUCUAAU   1   *|=|||=|||||||||||||| targets:287   CAGACCUCAGGAUGCAGAUUA   307 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106349282), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106349282)	coding protein	psRNATarget
XM_013814805.1	ncRNA:21   AUUUGGGGUCCUACGUCUAAU   1   *|=|||=|||||||||||||| targets:296   CAGACCUCAGGAUGCAGAUUA   316 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013814806.1	ncRNA:21   AUUUGGGGUCCUACGUCUAAU   1   *|=|||=|||||||||||||| targets:344   CAGACCUCAGGAUGCAGAUUA   364 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X2, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013865485.1	ncRNA:21   AUUUGGGGUCCUACGUCUAAU   1   |||||*=|||||||||||||| targets:301   UAAACAUCAGGAUGCAGAUUA   321 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106424736), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106424736)	coding protein	psRNATarget
XM_013825745.1	ncRNA:21   AUUUGGGGUCCUACGUCUAAU   1   |||||*=|||||||||||||| targets:295   UAAACAUCAGGAUGCAGAUUA   315 Target Full Sequence	2.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106385848), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106385848)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).