Search result

BaseInfo

ncRNA ID ath-miR405a
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:9634957-9635113 [-]
Reference genome TAIR10
Source miRBase
Length 24
Mature sequence(if miRNA) 45 - AUGAGUUGGGUCUAACCCAUAACU - 68
Stem-loop(if miRNA) UCA      G       --ACC    C       UAA        GUUUAUGAUUA               -              U
   AAAUGG UAACCCA     CAAC CAACUCA   UCAAAUGA           AAUGAGUUAUGGGUU GACCCAACUCAUUU G
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||
   UUUACC AUUGGGU     GUUG GUUGGGU   AGUUUACU           UUACUCAAUACCCAA CUGGGUUGAGUAAA U
--A      A       AAAUU    A       ---        -----------               U              U
Stem-loop sequence UCAAAAUGGGUAACCCAACCCAACCCAACUCAUAAUCAAAUGAGUUUAUGAUUAAAUGAGUUAUGGGUUGACCCAACUCAUUUUGUUAAAUGAGUUGGGUCUAACCCAUAACUCAUUUCAUUUGAUGGGUUGAGUUGUUAAAUGGGUUAACCAUUUA

Reference

1 PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis";
Sunkar R, Zhu JK;
Plant Cell. 16:2001-2019(2004).