ncRNA ID | ath-miR405a |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:9634957-9635113 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 45 - AUGAGUUGGGUCUAACCCAUAACU - 68 |
Stem-loop(if miRNA) |
UCA      G       --ACC    C       UAA        GUUUAUGAUUA               -              U    AAAUGG UAACCCA     CAAC CAACUCA   UCAAAUGA           AAUGAGUUAUGGGUU GACCCAACUCAUUU G    |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||    UUUACC AUUGGGU     GUUG GUUGGGU   AGUUUACU           UUACUCAAUACCCAA CUGGGUUGAGUAAA U --A      A       AAAUU    A       ---        -----------               U              U |
Stem-loop sequence | UCAAAAUGGGUAACCCAACCCAACCCAACUCAUAAUCAAAUGAGUUUAUGAUUAAAUGAGUUAUGGGUUGACCCAACUCAUUUUGUUAAAUGAGUUGGGUCUAACCCAUAACUCAUUUCAUUUGAUGGGUUGAGUUGUUAAAUGGGUUAACCAUUUA |
1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |