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BaseInfo

ncRNA ID	bna-miR399c
Species	Brassica napus
Class	miRNA
Genome position	EM:BH538972:179-281 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	79 - UGCCAAAGGAGAUUUGUCCGG - 99
Stem-loop(if miRNA)	A     A               GA U -      UUCAGUCUU      G AUUAC GGGCA GAUCUCCUUUGGCAG  A C CAUUAC         ACAUAU C ||||| ||||| |||||||||||||||  | | ||||||         |||||| UAAUG CCUGU UUAGAGGAAACCGUC  U G GUGGUG         UGUAUA A      G     -               UC C A      -------UU      U
Stem-loop sequence	AUUACAGGGCAAGAUCUCCUUUGGCAGGAAUCCAUUACUUCAGUCUUACAUAUGCAUAUAUGUUUGUGGUGAGCUCUCUGCCAAAGGAGAUUUGUCCGGUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013889066.1	ncRNA:21   GGCCUGUUUAGAGGAAACCGU   1   ==||=|||||||||||||||| targets:496   UUGGGCAAAUCUCCUUUGGCA   516 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCUGUUUAGAGGAAACCGU   1   =*||=|||||||||||||||| targets:420   UAGGGCAAAUCUCCUUUGGCA   440 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCU-GUUUAGAGGAAACCGU   1   =||||-|||||||||||||||| targets:733   UCGGAGCAAAUCUCCUUUGGCA   754 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCUGUUUAGAGGAAACCGU   1   =*||=||*||||||||||||| targets:591   UGGGGCAUAUCUCCUUUGGCA   611 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCU-GUUUAGAGGAAACCGU   1   =||||-|||||||||||||||| targets:656   UCGGAGCAAAUCUCCUUUGGCA   677 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCUGUUUAGAGGAAACCGU   1   =*||=||*||||||||||||| targets:514   UGGGGCAUAUCUCCUUUGGCA   534 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCU-GUUUAGAGGAAACCGU   1   *|*||-|||||||||||||||| targets:790   GCAGAGCAAAUCUCCUUUGGCA   811 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCU-GUUUAGAGGAAACCGU   1   *|*||-|||||||||||||||| targets:713   GCAGAGCAAAUCUCCUUUGGCA   734 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).