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BaseInfo

ncRNA ID bna-miR169e
Species Brassica napus
Class miRNA
Genome position EM:BH434672:301-577 [+]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 252 - UAGCCAAGGAUGACUUGCCUA - 272
Stem-loop(if miRNA) -GUUUC     -   -            UU  C   CUUUU      CA    A      CUUUC    U    UUCGAAUCCAAAUAAUAUUUUUUUCUAUAAAUUUACUACGAAAAUCCUUUAAACAAUCUCUAACAAAGUAU
      AGGCA GUC UCCUUGGCUAUC  GA AUG     UUCUUC  UGUU UACCUU     UUUG AUUU                                                                       G
      ||||| ||| ||||||||||||  || |||     ||||||  |||| ||||||     |||| ||||
      UCCGU CAG AGGAACCGAUGG  UU UAC     AAGAAG  AUAA GUGGAA     UGUA AAGG                                                                       U
UCUUUA     U   U            -U  A   ----U      --    -      ---AC    -    AAGAUUUCUUACGUAUGUGAGUGGUGCAUGUACGUAAACAUUAUUUACGUUUUUCACCAUCAAAAGAUUAU
Stem-loop sequence GUUUCAGGCAGUCUCCUUGGCUAUCUUGACAUGCUUUUUUCUUCCAUGUUAUACCUUCUUUCUUUGUAUUUUUCGAAUCCAAAUAAUAUUUUUUUCUAUAAAUUUACUACGAAAAUCCUUUAAACAAUCUCUAACAAAGUAUGUUAUUAGAAAACUACCACUUUUUGCAUUUAUUACAAAUGCAUGUACGUGGUGAGUGUAUGCAUUCUUUAGAAGGAAAUGUCAAAGGUGAAUAGAAGAAUCAUAUUUGGUAGCCAAGGAUGACUUGCCUAUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013872447.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:894   AGGGGAAGUCAUCCUUGGCUA   914

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X2, mRNA nuclear transcription factor Y subunit A-5-like(LOC106431642) coding protein psRNATarget
XM_013872446.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:897   AGGGGAAGUCAUCCUUGGCUA   917

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X1, mRNA nuclear transcription factor Y subunit A-5-like(LOC106431642) coding protein psRNATarget
XM_013846894.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1276   AGGGGAAGUCAUCCUUGGCUA   1296

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406270), mRNA nuclear transcription factor Y subunit A-3-like(LOC106406270) coding protein psRNATarget
XM_013843696.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1280   AGGGGAAGUCAUCCUUGGCUA   1300

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X2, mRNA nuclear transcription factor Y subunit A-3-like(LOC106402883) coding protein psRNATarget
XM_013840111.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1288   GGGGGAAGUCAUCCUUGGCUA   1308

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106399653), mRNA nuclear transcription factor Y subunit A-3-like(LOC106399653) coding protein psRNATarget
XM_013837663.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1289   GGGGGAAGUCAUCCUUGGCUA   1309

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106397102), mRNA nuclear transcription factor Y subunit A-3-like(LOC106397102) coding protein psRNATarget
XM_013821179.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1276   GGGGGAAGUCAUCCUUGGCUA   1296

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X5, mRNA nuclear transcription factor Y subunit A-3-like(LOC106381285) coding protein psRNATarget
XM_013846895.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1223   AGGGGAAGUCAUCCUUGGCUA   1243

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406271), mRNA nuclear transcription factor Y subunit A-3-like(LOC106406271) coding protein psRNATarget
XM_013821178.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1295   GGGGGAAGUCAUCCUUGGCUA   1315

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X4, mRNA nuclear transcription factor Y subunit A-3-like(LOC106381285) coding protein psRNATarget
XM_013843695.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1313   AGGGGAAGUCAUCCUUGGCUA   1333

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X1, mRNA nuclear transcription factor Y subunit A-3-like(LOC106402883) coding protein psRNATarget
XM_013794135.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1314   AGGGGAAGUCAUCCUUGGCUA   1334

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106354243), mRNA nuclear transcription factor Y subunit A-3-like(LOC106354243) coding protein psRNATarget
XM_013843873.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1377   AGGGGAAGUCAUCCUUGGCUA   1397

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X2, mRNA nuclear transcription factor Y subunit A-3-like(LOC106403032) coding protein psRNATarget
XM_013843872.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1385   AGGGGAAGUCAUCCUUGGCUA   1405

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X1, mRNA nuclear transcription factor Y subunit A-3-like(LOC106403032) coding protein psRNATarget
XM_013821177.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1390   GGGGGAAGUCAUCCUUGGCUA   1410

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X3, mRNA nuclear transcription factor Y subunit A-3-like(LOC106381285) coding protein psRNATarget
XM_013821176.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1402   GGGGGAAGUCAUCCUUGGCUA   1422

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X2, mRNA nuclear transcription factor Y subunit A-3-like(LOC106381285) coding protein psRNATarget
XM_013821175.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1610   GGGGGAAGUCAUCCUUGGCUA   1630

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X1, mRNA nuclear transcription factor Y subunit A-3-like(LOC106381285) coding protein psRNATarget
XM_013817827.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **||*||||||||||||||||
targets:1123   ACGGGAAGUCAUCCUUGGCUA   1143

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X3, mRNA nuclear transcription factor Y subunit A-6(LOC106377560) coding protein psRNATarget
XM_013817826.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **||*||||||||||||||||
targets:1127   ACGGGAAGUCAUCCUUGGCUA   1147

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X2, mRNA nuclear transcription factor Y subunit A-6(LOC106377560) coding protein psRNATarget
XM_013817825.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **||*||||||||||||||||
targets:1148   ACGGGAAGUCAUCCUUGGCUA   1168

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X1, mRNA nuclear transcription factor Y subunit A-6(LOC106377560) coding protein psRNATarget
XM_013817829.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **||*||||||||||||||||
targets:1336   ACGGGAAGUCAUCCUUGGCUA   1356

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X5, mRNA nuclear transcription factor Y subunit A-6(LOC106377560) coding protein psRNATarget
XM_013817828.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **||*||||||||||||||||
targets:1340   ACGGGAAGUCAUCCUUGGCUA   1360

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X4, mRNA nuclear transcription factor Y subunit A-6(LOC106377560) coding protein psRNATarget
XM_013817830.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **||*||||||||||||||||
targets:1378   ACGGGAAGUCAUCCUUGGCUA   1398

1.0 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X6, mRNA nuclear transcription factor Y subunit A-6(LOC106377560) coding protein psRNATarget
XM_013819709.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *=||*|||||||*||||||||
targets:978   AGGGGAAGUCAUACUUGGCUA   998

2.5 PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106379846), mRNA nuclear transcription factor Y subunit A-5-like(LOC106379846) coding protein psRNATarget

Reference

1 PMID:17659282
"Cloning and characterization of microRNAs from Brassica napus";
Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL;
FEBS Lett. 581:3848-3856(2007).
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