| ncRNA ID | ath-miR779.1 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:9560761-9560923 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 142 - UUCUGCUAUGUUGCUGCUCAU - 162 |
| Stem-loop(if miRNA) |
- U U A UUUCAA A U C C U AAUGAG AGUAAUAUAGU GAAUC UCGA AGUA GA GUCAGC GAG UUUCU GUCAUCACUUAUUAG AAAUAUAGU |||||| ||||||||||| ||||| |||| |||| || |||||| ||| ||||| ||||||||||||||| ||||||||C UUACUC UCGUUGUAUCG CUUAG AGUU UCAU CU CAGUUG CUU AAAGG UAGUAGUGAGUAGUU UUUAUAUCU G U U C ----UA - - U U - |
| Stem-loop sequence | AAUGAGAGUAAUAUAGUUGAAUCUUCGAAAGUAUUUCAAGAAGUCAGCUGAGCUUUCUCGUCAUCACUUAUUAGUAAAUAUAGUCUCUAUAUUUUUGAUGAGUGAUGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGCUAUGUUGCUGCUCAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001336885.1 |
|
2.5 | Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA | PQ-loop repeat family protein / transmembrane family protein(AT2G41050) | coding protein | psRNATarget | |||||||||
| AY133749.1 |
|
2.5 | Arabidopsis thaliana clone U19895 unknown protein (At2g41050) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY080611.1 |
|
2.5 | Arabidopsis thaliana unknown protein (At2g41050) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_180009.2 |
|
2.5 | Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA | PQ-loop repeat family protein / transmembrane family protein(AT2G41050) | coding protein | psRNATarget | |||||||||
| NM_001336888.1 |
|
2.5 | Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA | PQ-loop repeat family protein / transmembrane family protein(AT2G41050) | coding protein | psRNATarget | |||||||||
| NM_001336887.1 |
|
2.5 | Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA | PQ-loop repeat family protein / transmembrane family protein(AT2G41050) | coding protein | psRNATarget | |||||||||
| NM_001336886.1 |
|
2.5 | Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA | PQ-loop repeat family protein / transmembrane family protein(AT2G41050) | coding protein | psRNATarget | |||||||||
| NM_129221.2 |
|
2.5 | Arabidopsis thaliana poly(A) binding protein 7 (PAB7), partial mRNA | poly(A) binding protein 7(PAB7) | coding protein | psRNATarget |
| 1 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |