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BaseInfo

ncRNA ID	bna-miR2111d
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189646:4110-4221 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	13 - UAAUCUGCAUCCUGAGGUUUA - 33
Stem-loop(if miRNA)	-    A   CU         C         U       U     G  AAUUAAA    G  GUGA GAA  GGUAAUCUG AUCCUGAGG UUAAAAA UUAUA GC       ACAU C  |||| |||  ||||||||| ||||||||| ||||||| ||||| ||       ||||  CAUU CUU  CCAUUAGGC UAGGGCUCC AAUUUUU GGUAU UG       UGUA A U    C   CU         A         U       U     G  -------    A
Stem-loop sequence	GUGAAGAACUGGUAAUCUGCAUCCUGAGGUUUAAAAAUUUAUAGGCAAUUAAAACAUGCAAAUGUGUGUAUGGUUUUUUAAUCCUCGGGAUACGGAUUACCUCUUCCUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013814807.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:236   CAGACCUCAGGAUGCAGAUUA   256 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X3, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013789225.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:287   CAGACCUCAGGAUGCAGAUUA   307 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106349282), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106349282)	coding protein	psRNATarget
XM_013814805.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:296   CAGACCUCAGGAUGCAGAUUA   316 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013814806.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *|=|||||||||||||||||| targets:344   CAGACCUCAGGAUGCAGAUUA   364 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X2, mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106374880)	coding protein	psRNATarget
XM_013865485.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:301   UAAACAUCAGGAUGCAGAUUA   321 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106424736), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106424736)	coding protein	psRNATarget
XM_013825745.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |||||*||||||||||||||| targets:295   UAAACAUCAGGAUGCAGAUUA   315 Target Full Sequence	1.0	PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106385848), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC106385848)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).