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BaseInfo

ncRNA ID	bna-miR171f
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189627:79418-79536 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	84 - UGAUUGAGCCGCGCCAAUAUC - 104
Stem-loop(if miRNA)	A    UC  CUUU         C       C      --  UCC   UUACACACG ACGA AGAG  CU    GAUAUUGGC UGGUUCA UCAGAU  CU   AGA         U |||| ||||  ||    ||||||||| ||||||| ||||||  ||   |||         A UGCU UCUC  GA    CUAUAACCG GCCGAGU AGUCUA  GA   UCU         C     C    GU  --CU         C       U      UU  CUC   UACAUAUAU
Stem-loop sequence	ACGAAAGAGUCCUCUUUGAUAUUGGCCUGGUUCACUCAGAUCUUCCAGAUUACACACGUACUAUAUACAUUCUCUCAGUUAUCUGAUUGAGCCGCGCCAAUAUCUCAGUGCUCUCUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013852286.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:814   GAUAUUGGCGCGGCUCAAUCA   834 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 22 (LOC106411510), mRNA	scarecrow-like protein 22(LOC106411510)	coding protein	psRNATarget
XM_013879337.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:886   GAUAUUGGCGCGGCUCAAUCA   906 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106438236), mRNA	scarecrow-like protein 27(LOC106438236)	coding protein	psRNATarget
XM_013832628.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:907   GAUAUUGGCGCGGCUCAAUCA   927 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 22 (LOC106391896), mRNA	scarecrow-like protein 22(LOC106391896)	coding protein	psRNATarget
XM_013841612.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:879   GAUAUUGGCGCGGCUCAAUCA   899 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 6 (LOC106401154), mRNA	scarecrow-like protein 6(LOC106401154)	coding protein	psRNATarget
XM_013872928.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1138   GAUAUUGGCGCGGCUCAAUCA   1158 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106432091), mRNA	scarecrow-like protein 27(LOC106432091)	coding protein	psRNATarget
XM_013792921.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1222   GAUAUUGGCGCGGCUCAAUCA   1242 Target Full Sequence	0.0	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106353214), mRNA	scarecrow-like protein 27(LOC106353214)	coding protein	psRNATarget
XM_013830007.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   |||||||*|*||||||||||| targets:483   GAUAUUGUCACGGCUCAAUCA   503 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 15 (LOC106389684), mRNA	scarecrow-like protein 15(LOC106389684)	coding protein	psRNATarget
XM_013797403.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   |||||||*|*||||||||||| targets:608   GAUAUUGUCACGGCUCAAUCA   628 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 15 (LOC106357715), mRNA	scarecrow-like protein 15(LOC106357715)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).
2	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).