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BaseInfo

ncRNA ID bna-miR166c
Species Brassica napus
Class miRNA
Genome position EM:AC189591:82389-82516 [+]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 93 - UCGGACCAGGCUUCAUUCCCC - 113
Stem-loop(if miRNA) -GAGCCAA     C   U      U      CU   -G C     --AA   G     UG G  G
        AAGUU AGG GGAUGA GCUUGG  CGA  A CAUUA    UAU AUCAU  U AU U
        ||||| ||| |||||| ||||||  |||  | |||||    ||| |||||  | ||
        UUCAA UCC CUUACU CGGACC  GCU  U GUAAU    AUA UAGUA  A UA U
UUUGCACA     C   C      U      AG   GA A     AGUA   G     GU G  G
Stem-loop sequence GAGCCAAAAGUUCAGGUGGAUGAUGCUUGGCUCGAGACCAUUAAAUAUGAUCAUUGUGAUGUUGAUGAUGAUGAUGAUAAUGAUAAUGAUAGUCGGACCAGGCUUCAUUCCCCUCAACUUACACGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013869322.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:548   CUGGAAUGAAGCCUGGUCCGG   568

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15-like (LOC106428572), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC106428572) coding protein psRNATarget
XM_013869323.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:210   CUGGAAUGAAGCCUGGUCCGG   230

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15-like (LOC106428573), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC106428573) coding protein psRNATarget
XM_013784922.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:1155   CUGGAAUGAAGCCUGGUCCGG   1175

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15 (LOC106345748), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15(LOC106345748) coding protein psRNATarget
XM_013784921.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:1155   CUGGAAUGAAGCCUGGUCCGG   1175

1.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-15 (LOC106345748), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15(LOC106345748) coding protein psRNATarget
XM_013874871.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:101   CUGGGAUGAAGCCUGGUCCGG   121

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106434033), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106434033) coding protein psRNATarget
XM_013874872.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1000   CUGGGAUGAAGCCUGGUCCGG   1020

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106434034), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106434034) coding protein psRNATarget
XM_013804628.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:798   CUGGGAUGAAGCCUGGUCCGG   818

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8 (LOC106365075), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-8(LOC106365075) coding protein psRNATarget
XM_013804561.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:868   CUGGGAUGAAGCCUGGUCCGG   888

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8 (LOC106365075), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-8(LOC106365075) coding protein psRNATarget
XM_013815197.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:895   CUGGGAUGAAGCCUGGUCCGG   915

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106375319), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106375319) coding protein psRNATarget
XM_013815198.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:896   CUGGGAUGAAGCCUGGUCCGG   916

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106375319), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106375319) coding protein psRNATarget
XM_013889094.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:882   UUGGGAUGAAGCCUGGUCCGG   902

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14-like (LOC106447219), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC106447219) coding protein psRNATarget
XM_013807005.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:826   UUGGGAUGAAGCCUGGUCCGG   846

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-9 (LOC106367270), mRNA homeobox-leucine zipper protein ATHB-9(LOC106367270) coding protein psRNATarget
XM_013851839.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:834   UUGGGAUGAAGCCUGGUCCGG   854

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-9-like (LOC106411145), mRNA homeobox-leucine zipper protein ATHB-9-like(LOC106411145) coding protein psRNATarget
XM_013811699.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:829   CUGGGAUGAAGCCUGGUCCGG   849

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA(LOC106371619) coding protein psRNATarget
XM_013873597.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:883   UUGGGAUGAAGCCUGGUCCGG   903

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14 (LOC106432754), mRNA homeobox-leucine zipper protein ATHB-14(LOC106432754) coding protein psRNATarget
XM_013800819.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:919   CUGGGAUGAAGCCUGGUCCGG   939

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106361118) coding protein psRNATarget
XM_013811700.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:964   CUGGGAUGAAGCCUGGUCCGG   984

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X3, mRNA homeobox-leucine zipper protein REVOLUTA(LOC106371619) coding protein psRNATarget
XM_013811698.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:994   CUGGGAUGAAGCCUGGUCCGG   1014

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA (LOC106371619), transcript variant X1, mRNA homeobox-leucine zipper protein REVOLUTA(LOC106371619) coding protein psRNATarget
XM_013800820.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1005   CUGGGAUGAAGCCUGGUCCGG   1025

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106361118) coding protein psRNATarget
XM_013800821.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1038   CUGGGAUGAAGCCUGGUCCGG   1058

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-8-like (LOC106361118), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-8-like(LOC106361118) coding protein psRNATarget
XM_013825067.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1190   CUGGGAUGAAGCCUGGUCCGG   1210

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106385108), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106385108) coding protein psRNATarget
XM_013787043.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||*|||||||||||||||=
targets:399   CUGGUAUGAAGCCUGGUCCGG   419

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X3, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106347496) coding protein psRNATarget
XM_013787042.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||*|||||||||||||||=
targets:984   CUGGUAUGAAGCCUGGUCCGG   1004

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106347496) coding protein psRNATarget
XM_013787041.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||*|||||||||||||||=
targets:1044   CUGGUAUGAAGCCUGGUCCGG   1064

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106347496), transcript variant X1, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106347496) coding protein psRNATarget
XM_013837246.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||*|||||||||||||||=
targets:1042   UUGGUAUGAAGCCUGGUCCGG   1062

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein ATHB-14 (LOC106396769), mRNA homeobox-leucine zipper protein ATHB-14(LOC106396769) coding protein psRNATarget
XM_013820336.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||*|||||||||||||||=
targets:1019   CUGGUAUGAAGCCUGGUCCGG   1039

2.0 PREDICTED: Brassica napus homeobox-leucine zipper protein REVOLUTA-like (LOC106380559), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106380559) coding protein psRNATarget

Reference

1 PMID:17659282
"Cloning and characterization of microRNAs from Brassica napus";
Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL;
FEBS Lett. 581:3848-3856(2007).
2 PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes";
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ;
Plant Physiol. 158:813-823(2012).
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