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BaseInfo

ncRNA ID bna-miR164b
Species Brassica napus
Class miRNA
Genome position EM:AC189579:62367-62476 [+]
Reference genome BrassicaDB-20080411
Source miRBase
Length 21
Mature sequence(if miRNA) 12 - UGGAGAAGCAGGGCACGUGCG - 32
Stem-loop(if miRNA) --------GU     U  C     A  C              CA    A       CGG
          UACAC UG UGGAG AG AGGGCACGUGCGAA  AAUG GAUCGAU   U
          ||||| || ||||| || ||||||||||||||  |||| |||||||
          GUGUG AC ACCUC UC UCUUGUGCACGCUU  UUAU CUAGUUG   A
CUCCCCCUCC     C  A     A  A              --    A       UAU
Stem-loop sequence GUUACACUUGCUGGAGAAGCAGGGCACGUGCGAACAAAUGAGAUCGAUCGGUAUAUGUUGAUCAUAUUUUCGCACGUGUUCUACUACUCCAACACGUGUGCCUCCCCCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013819156.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:756   CUUACGUGCCCUGCUUCUCCA   776

1.0 PREDICTED: Brassica napus NAC domain-containing protein 100-like (LOC106379142), mRNA NAC domain-containing protein 100-like(LOC106379142) coding protein psRNATarget
NM_001316090.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:623   CUUACGUGCCCUGCUUCUCCA   643

1.0 Brassica napus NAC domain-containing protein 100-like (LOC106422698), mRNA NAC domain-containing protein 100-like(LOC106422698) coding protein psRNATarget
KC966757.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:623   CUUACGUGCCCUGCUUCUCCA   643

1.0 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds NA coding protein psRNATarget
XM_013894441.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||*||||||||||||||||
targets:748   AGCAAGUGCCCUGCUUCUCCA   768

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22 (LOC106452350), mRNA NAC domain-containing protein 21/22(LOC106452350) coding protein psRNATarget
KC966749.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||*||||||||||||||||
targets:671   AGCAAGUGCCCUGCUUCUCCA   691

1.0 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds NA coding protein psRNATarget
NM_001315922.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||*||||||||||||||||
targets:671   AGCAAGUGCCCUGCUUCUCCA   691

1.0 Brassica napus NAC domain-containing protein 21/22 (LOC106429030), mRNA NAC domain-containing protein 21/22(LOC106429030) coding protein psRNATarget
XM_013840299.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||*||||||||||||||||
targets:734   AGCAAGUGCCCUGCUUCUCCA   754

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22-like (LOC106399855), mRNA NAC domain-containing protein 21/22-like(LOC106399855) coding protein psRNATarget
XM_013793969.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||*||||||||||||||||
targets:787   AGCAAGUGCCCUGCUUCUCCA   807

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22-like (LOC106354108), mRNA NAC domain-containing protein 21/22-like(LOC106354108) coding protein psRNATarget
XM_013835719.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||*||||||||||||||||
targets:710   AGCAAGUGCCCUGCUUCUCCA   730

1.0 PREDICTED: Brassica napus NAC domain-containing protein 21/22-like (LOC106395207), mRNA NAC domain-containing protein 21/22-like(LOC106395207) coding protein psRNATarget
XM_013839499.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||||||=||||||||||||
targets:668   AGCACGUGUCCUGCUUCUCCA   688

1.5 PREDICTED: Brassica napus protein CUP-SHAPED COTYLEDON 1 (LOC106399016), mRNA protein CUP-SHAPED COTYLEDON 1(LOC106399016) coding protein psRNATarget
XM_013808576.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||||||||||||*|||||*
targets:133   GGCACGUGCCCUGCCUCUCCU   153

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase ORTHRUS 2-like (LOC106368575), mRNA E3 ubiquitin-protein ligase ORTHRUS 2-like(LOC106368575) coding protein psRNATarget
XM_013808575.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||||||||||||*|||||*
targets:133   GGCACGUGCCCUGCCUCUCCU   153

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase ORTHRUS 2-like (LOC106368573), mRNA E3 ubiquitin-protein ligase ORTHRUS 2-like(LOC106368573) coding protein psRNATarget
XM_013839678.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||||*|||||||||=
targets:887   CUCACGUGCCAUGCUUCUCCG   907

2.5 PREDICTED: Brassica napus NAC domain-containing protein 59-like (LOC106399205), mRNA NAC domain-containing protein 59-like(LOC106399205) coding protein psRNATarget
XM_013873148.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:812   CUCACGUGACCUGCUUCUCCG   832

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106432307), transcript variant X1, mRNA NAC domain-containing protein 92-like(LOC106432307) coding protein psRNATarget
XM_013873150.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:777   CUCACGUGACCUGCUUCUCCG   797

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106432307), transcript variant X2, mRNA NAC domain-containing protein 92-like(LOC106432307) coding protein psRNATarget
XM_013873151.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:772   CUCACGUGACCUGCUUCUCCG   792

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106432307), transcript variant X3, mRNA NAC domain-containing protein 92-like(LOC106432307) coding protein psRNATarget
XM_013839855.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||||*|||||||||=
targets:917   CUCACGUGCCAUGCUUCUCCG   937

2.5 PREDICTED: Brassica napus NAC domain-containing protein 59-like (LOC106399372), mRNA NAC domain-containing protein 59-like(LOC106399372) coding protein psRNATarget
XM_013792301.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:748   CUCACGUGACCUGCUUCUCCG   768

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106352671), mRNA NAC domain-containing protein 92-like(LOC106352671) coding protein psRNATarget
XM_013843743.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:770   CUCACGUGACCUGCUUCUCCG   790

2.5 PREDICTED: Brassica napus NAC domain-containing protein 92-like (LOC106402917), mRNA NAC domain-containing protein 92-like(LOC106402917) coding protein psRNATarget
KF738276.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:641   CUCACGUGACCUGCUUCUCCG   661

2.5 Brassica napus NAC transcription factor 92 (NAC92.1) mRNA, complete cds NA coding protein psRNATarget
NM_001316064.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:641   CUCACGUGACCUGCUUCUCCG   661

2.5 Brassica napus NAC domain-containing protein 92-like (LOC106449568), mRNA NAC domain-containing protein 92-like(LOC106449568) coding protein psRNATarget
XM_013879452.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*|=|*||||||||||||||*
targets:708   CUCGCCUGCCCUGCUUCUCCC   728

3.0 PREDICTED: Brassica napus UDP-glucuronic acid decarboxylase 4-like (LOC106438334), mRNA UDP-glucuronic acid decarboxylase 4-like(LOC106438334) coding protein psRNATarget

Reference

1 PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes";
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ;
Plant Physiol. 158:813-823(2012).
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