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BaseInfo

ncRNA ID	bna-miR824
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189548:18638-19269 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	22 - UAGACCAUUUGUGAGAAGGGA - 42
Stem-loop(if miRNA)	-----    UG    U               U             -UUUUGUUU     GUUCA          --AAUC       AGUAUUAAGGAAAAUAGCUUGUUCAACAUAUCACACUACUCUUUUAGAAACAAAACUAUAUUUUAGAUGCUUUUCCAGCUUGAUAUACGUUGUUUUGUUAUGUAUACCUGUAUUCUCCCGGCUACCAAAACGUUAAGAAAUAAGGUGAACAUCUCCCCAAAACCUGCAUCCAAUUAGAAAGGUCUAGGUCACAGCCAUUACUUGCUAUCUCUCGAUUAAGCUAUUUUAU CCUC     GAGU  UCUU CAUGUCUAGACCAUU GUGAGAAGGGAUU         GCACC     CCCCACUCUC      UGUAGUG                                                                                                                                                                                                                                     U ||||     ||||  |||| ||||||||||||||| |||||||||||||         |||||     ||||||||||      |||||||                                                                                                                                                                                                                                     U GGAG     CUCA  GGAG GUGUAGAUCUGGUAG UACUCUUCCCUGA         CGUGG     GGGGUGAGGG      UAAAUGA                                                                                                                                                                                                                                     C     UUACU    GU    C               C             UUAUUGGGU     ---AA          GUUCAA       UACUUCAUUUGAUCACAUCGAUUCAUCACGUUCUAAGUUCAAGAAUCGAUAGUACUUUAUGGAGAUUGUGAGGUCUGUCUCCAAACUGUAGAGCAUCCUUUUUACAGACAGGCUUCACACCGUAUCAGGUUUUUGUUUUAUAAUACAUACGUCGUAGGUCUUUACAGUACUUACCUGAAUUACAUAAAAUAAAAUAUGAAUUGAGGACUUACUAGACUACUACUACUAU
Stem-loop sequence	CCUCGAGUUGUCUUUCAUGUCUAGACCAUUUGUGAGAAGGGAUUUUUUGUUUGCACCGUUCACCCCACUCUCAAUCUGUAGUGAGUAUUAAGGAAAAUAGCUUGUUCAACAUAUCACACUACUCUUUUAGAAACAAAACUAUAUUUUAGAUGCUUUUCCAGCUUGAUAUACGUUGUUUUGUUAUGUAUACCUGUAUUCUCCCGGCUACCAAAACGUUAAGAAAUAAGGUGAACAUCUCCCCAAAACCUGCAUCCAAUUAGAAAGGUCUAGGUCACAGCCAUUACUUGCUAUCUCUCGAUUAAGCUAUUUUAUUUCUAUCAUCAUCAUCAGAUCAUUCAGGAGUUAAGUAUAAAAUAAAAUACAUUAAGUCCAUUCAUGACAUUUCUGGAUGCUGCAUACAUAAUAUUUUGUUUUUGGACUAUGCCACACUUCGGACAGACAUUUUUCCUACGAGAUGUCAAACCUCUGUCUGGAGUGUUAGAGGUAUUUCAUGAUAGCUAAGAACUUGAAUCUUGCACUACUUAGCUACACUAGUUUACUUCAUAGUAAAUAACUUGGGGAGUGGGGAAGGUGCUGGGUUAUUAGUCCCUUCUCAUCGAUGGUCUAGAUGUGCGAGGUGACUCUCAUUGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013831398.1	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   ||=|||||||||||||||||| targets:761   UCUCUUCUCACAAAUGGUCUA   781 Target Full Sequence	1.0	PREDICTED: Brassica napus agamous-like MADS-box protein AGL16 (LOC106390859), mRNA	agamous-like MADS-box protein AGL16(LOC106390859)	coding protein	psRNATarget
XM_013834609.1	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   ||=|||||||||||||||||| targets:751   UCUCUUCUCACAAAUGGUCUA   771 Target Full Sequence	1.0	PREDICTED: Brassica napus agamous-like MADS-box protein AGL16 (LOC106393975), mRNA	agamous-like MADS-box protein AGL16(LOC106393975)	coding protein	psRNATarget
XM_013882940.1	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   ||=|||||||||||||||||| targets:763   UCUCUUCUCACAAAUGGUCUA   783 Target Full Sequence	1.0	PREDICTED: Brassica napus agamous-like MADS-box protein AGL16 (LOC106441133), mRNA	agamous-like MADS-box protein AGL16(LOC106441133)	coding protein	psRNATarget
XM_013796847.1	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   ||=|||||||||||||||||| targets:808   UCUCUUCUCACAAAUGGUCUA   828 Target Full Sequence	1.0	PREDICTED: Brassica napus agamous-like MADS-box protein AGL16 (LOC106357131), mRNA	agamous-like MADS-box protein AGL16(LOC106357131)	coding protein	psRNATarget
XM_013815264.1	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   *||**|||||||||||||||= targets:363   ACCAAUCUCACAAAUGGUCUG   383 Target Full Sequence	3.0	PREDICTED: Brassica napus transcription initiation factor TFIID subunit 14b (LOC106375374), transcript variant X2, mRNA	transcription initiation factor TFIID subunit 14b(LOC106375374)	coding protein	psRNATarget
XM_013815263.1	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   *||**|||||||||||||||= targets:365   ACCAAUCUCACAAAUGGUCUG   385 Target Full Sequence	3.0	PREDICTED: Brassica napus transcription initiation factor TFIID subunit 14b (LOC106375374), transcript variant X1, mRNA	transcription initiation factor TFIID subunit 14b(LOC106375374)	coding protein	psRNATarget

Reference

1	PMID:17704216 "MicroRNA-mediated regulation of stomatal development in Arabidopsis"; Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A; Plant Cell. 19:2417-2429(2007).