ncRNA ID | ath-miR779.2 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:9560761-9560923 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 106 - UGAUUGGAAAUUUCGUUGACU - 126 |
Stem-loop(if miRNA) |
      -           U     U    A    UUUCAA  A      U   C     C               U         AAUGAG AGUAAUAUAGU GAAUC UCGA AGUA      GA GUCAGC GAG UUUCU GUCAUCACUUAUUAG AAAUAUAGU |||||| ||||||||||| ||||| |||| ||||      || |||||| ||| ||||| ||||||||||||||| ||||||||C UUACUC UCGUUGUAUCG CUUAG AGUU UCAU      CU CAGUUG CUU AAAGG UAGUAGUGAGUAGUU UUUAUAUCU       G           U     U    C    ----UA  -      -   U     U               -         |
Stem-loop sequence | AAUGAGAGUAAUAUAGUUGAAUCUUCGAAAGUAUUUCAAGAAGUCAGCUGAGCUUUCUCGUCAUCACUUAUUAGUAAAUAUAGUCUCUAUAUUUUUGAUGAGUGAUGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGCUAUGUUGCUGCUCAUU |
1 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |