Search result

BaseInfo

ncRNA ID ath-miR779.2
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:9560761-9560923 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 106 - UGAUUGGAAAUUUCGUUGACU - 126
Stem-loop(if miRNA)       -           U     U    A    UUUCAA  A      U   C     C               U        
AAUGAG AGUAAUAUAGU GAAUC UCGA AGUA      GA GUCAGC GAG UUUCU GUCAUCACUUAUUAG AAAUAUAGU
|||||| ||||||||||| ||||| |||| ||||      || |||||| ||| ||||| ||||||||||||||| ||||||||C
UUACUC UCGUUGUAUCG CUUAG AGUU UCAU      CU CAGUUG CUU AAAGG UAGUAGUGAGUAGUU UUUAUAUCU
      G           U     U    C    ----UA  -      -   U     U               -        
Stem-loop sequence AAUGAGAGUAAUAUAGUUGAAUCUUCGAAAGUAUUUCAAGAAGUCAGCUGAGCUUUCUCGUCAUCACUUAUUAGUAAAUAUAGUCUCUAUAUUUUUGAUGAGUGAUGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGCUAUGUUGCUGCUCAUU

Reference

1 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).