| ncRNA ID | bna-miR390b |
| Species | Brassica napus |
| Class | miRNA |
| Genome position | EM:AC189543:93838-93942 [+] |
| Reference genome | BrassicaDB-20080411 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 18 - AAGCUCAGGAGGGAUAGCGCC - 38 |
| Stem-loop(if miRNA) |
-- AU U A G UCAUG ACA GUAG AGAAGA C GU AAGCUCAGGA GGAUAGCGCCA AUC C |||| |||||| | || |||||||||| ||||||||||| ||| A CAUC UCUUCU G UA UUUGAGUCCU CCUGUCGCGGU UAG C AU CG U C A UUUUA CUA |
| Stem-loop sequence | GUAGAGAAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCAUCAUGAUCACACACAUCGAUAUUUUUGGCGCUGUCCAUCCUGAGUUUCAUUGGCUCUUCUUACUAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_013810883.1 |
|
2.5 | PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X3, mRNA | cytochrome P450 78A6-like(LOC106370887) | coding protein | psRNATarget | |||||||||
| XM_013842905.1 |
|
2.5 | PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106402213), mRNA | cytochrome P450 78A6-like(LOC106402213) | coding protein | psRNATarget | |||||||||
| XM_013841739.1 |
|
2.5 | PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106401261), mRNA | cytochrome P450 78A6-like(LOC106401261) | coding protein | psRNATarget | |||||||||
| XM_013810884.1 |
|
2.5 | PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X4, mRNA | cytochrome P450 78A6-like(LOC106370887) | coding protein | psRNATarget | |||||||||
| XM_013810882.1 |
|
2.5 | PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X2, mRNA | cytochrome P450 78A6-like(LOC106370887) | coding protein | psRNATarget | |||||||||
| XM_013810879.1 |
|
2.5 | PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X1, mRNA | cytochrome P450 78A6-like(LOC106370887) | coding protein | psRNATarget |
| 1 | PMID:17659282
"Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007). |
| 2 | PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012). |