| ncRNA ID | bna-miR1140 |
| Species | Brassica napus |
| Class | miRNA |
| Genome position | EM:AC189528:128989-129138 [+] |
| Reference genome | BrassicaDB-20080411 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 120 - ACAGCCUAAACCAAUCGGAGC - 140 |
| Stem-loop(if miRNA) |
CUCA UUUUA C U CUUU GUCUUCAAAAUUUAGUUU AUC UAUGGCUCCGAUUGG UUUAGGCUGUUGUGGCU UGACUU CUAAA U ||| ||||||||||||||| ||||||||||||||||| |||||| ||||| U UAG GUACCGAGGCUAACC AAAUCCGACAACACCGA ACUGAA AAUUU C ---G ---UG - C ---- UUUUAAAUUGCACUAACA |
| Stem-loop sequence | CUCAAUCUUUUAUAUGGCUCCGAUUGGCUUUAGGCUGUUGUGGCUUUGACUUCUUUCUAAAGUCUUCAAAAUUUAGUUUUUCACAAUCACGUUAAAUUUUUUUAAAAGUCACAGCCACAACAGCCUAAACCAAUCGGAGCCAUGGUGAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_013830794.1 |
|
2.5 | PREDICTED: Brassica napus uncharacterized LOC106390352 (LOC106390352), mRNA | uncharacterized LOC106390352(BNAC07G16420D) | coding protein | psRNATarget | |||||||||
| XM_013869193.1 |
|
3.0 | PREDICTED: Brassica napus probable calcium-binding protein CML50 (LOC106428435), transcript variant X1, mRNA | probable calcium-binding protein CML50(LOC106428435) | coding protein | psRNATarget | |||||||||
| XM_013869197.1 |
|
3.0 | PREDICTED: Brassica napus probable calcium-binding protein CML50 (LOC106428435), transcript variant X2, mRNA | probable calcium-binding protein CML50(LOC106428435) | coding protein | psRNATarget |
| 1 | PMID:17659282
"Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007). |
| 2 | PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012). |