ncRNA ID | bna-miR2111a-5p |
Species | Brassica napus |
Class | miRNA |
Genome position | EM:AC189394:23548-23698 [+] |
Reference genome | BrassicaDB-20080411 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 27 - UAAUCUGCAUCCUGAGGUUUA - 47 |
Stem-loop(if miRNA) |
GAUGACAA U CC -UUU -UGAUUAU ---AC C GUAU GGUGAGGA GGGUAAUCUGCAUCCUGAGG AAAGCU ACGCAUA AUGC G |||| |||||||| |||||||||||||||||||| |||||| ||||||| |||| CAUA UCAUUCCU UCCAUUAGGCGUAGGGCUCC UUUCGA UGUGUAU UACG A -GCACAUG - UC UGAU UAAGAUUU CAAUA C |
Stem-loop sequence | GAUGACAAGUAUUGGUGAGGACCGGGUAAUCUGCAUCCUGAGGUUUAAAGCUUGAUUAUACGCAUAACAUGCCGACGCAUAUAACUAUGUGUUUUAGAAUAGCUUUUAGUCCUCGGGAUGCGGAUUACCUCUUCCUUACUAUACGUACACG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013814807.1 |
|
1.0 | PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X3, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC106374880) | coding protein | psRNATarget | |||||||||
XM_013789225.1 |
|
1.0 | PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106349282), mRNA | F-box/kelch-repeat protein At3g27150-like(LOC106349282) | coding protein | psRNATarget | |||||||||
XM_013814805.1 |
|
1.0 | PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X1, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC106374880) | coding protein | psRNATarget | |||||||||
XM_013814806.1 |
|
1.0 | PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106374880), transcript variant X2, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC106374880) | coding protein | psRNATarget | |||||||||
XM_013865485.1 |
|
1.0 | PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106424736), mRNA | F-box/kelch-repeat protein At3g27150-like(LOC106424736) | coding protein | psRNATarget | |||||||||
XM_013825745.1 |
|
1.0 | PREDICTED: Brassica napus F-box/kelch-repeat protein At3g27150-like (LOC106385848), mRNA | F-box/kelch-repeat protein At3g27150-like(LOC106385848) | coding protein | psRNATarget |
1 | PMID:19465578
"Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"; Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR; Plant Physiol. 150:1541-1555(2009). |
2 | PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012). |