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BaseInfo

ncRNA ID	bna-miR172a
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189388:19381-19490 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	8 - AGAAUCUUGAUGAUGCUGCAU - 28
Stem-loop(if miRNA)	UU    A GC      C           A    GAA  UGA     CU      U   UUGU G  GCAGCA CAUCAAGAUUC CAUG   AU   AAAAU  CCUAAU U   |||| |  |||||| ||||||||||| ||||   ||   |||||  |||||| U   AACA C  CGUCGU GUAGUUCUAAG GUAU   UA   UUUUG  GGAUUA U -C    A UA      A           A    AUG  UAG     --      A
Stem-loop sequence	UUUUGUAGGCGCAGCACCAUCAAGAUUCACAUGGAAAUUGAAAAAUCUCCUAAUUUUUAAUUAGGGUUUUGAUAUGUAUAUGAGAAUCUUGAUGAUGCUGCAUCAACAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013852445.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1302   AUGCAGCAUCAUCAGGAUUCU   1322 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106411646), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106411646)	coding protein	psRNATarget
XM_013829973.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1541   AUGCAGCAUCAUCAGGAUUCU   1561 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106389655), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106389655)	coding protein	psRNATarget
XM_013852444.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1219   AUGCAGCAUCAUCAGGAUUCU   1239 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106411646), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106411646)	coding protein	psRNATarget
XM_013787005.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1392   AUGCAGCAUCAUCAGGAUUCU   1412 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106347473), mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106347473)	coding protein	psRNATarget
XM_013859428.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1578   AUGCAGCAUCAUCAGGAUUCU   1598 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106418682)	coding protein	psRNATarget
XM_013825702.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1427   AUGCAGCAUCAUCAGGAUUCU   1447 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106385800), mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106385800)	coding protein	psRNATarget
XM_013859430.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1362   AUGCAGCAUCAUCAGGAUUCU   1382 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106418682)	coding protein	psRNATarget
XM_013829972.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1417   AUGCAGCAUCAUCAGGAUUCU   1437 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106389655), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106389655)	coding protein	psRNATarget
XM_013852443.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1417   AUGCAGCAUCAUCAGGAUUCU   1437 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106411646), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106411646)	coding protein	psRNATarget
XM_013859429.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1470   AUGCAGCAUCAUCAGGAUUCU   1490 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106418682)	coding protein	psRNATarget
XM_013829971.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1474   AUGCAGCAUCAUCAGGAUUCU   1494 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106389655), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106389655)	coding protein	psRNATarget
XM_013859427.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1582   AUGCAGCAUCAUCAGGAUUCU   1602 Target Full Sequence	1.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE2 (LOC106418682), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC106418682)	coding protein	psRNATarget
XM_013787958.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:695   CUGCAGCAUCAUCAGGAUUCU   715 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348249), partial mRNA	floral homeotic protein APETALA 2-like(LOC106348249)	coding protein	psRNATarget
XM_013864084.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:947   CUGCAGCAUCAUCAGGAUUCU   967 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2 (LOC106423299), partial mRNA	floral homeotic protein APETALA 2(LOC106423299)	coding protein	psRNATarget
HQ637468.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1178   CUGCAGCAUCAUCAGGAUUCU   1198 Target Full Sequence	1.5	Brassica napus APETALA2 (APETALA2) mRNA, complete cds	NA	coding protein	psRNATarget
XM_013793466.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1078   CUGCAGCAUCAUCAGGAUUCU   1098 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106353677), mRNA	floral homeotic protein APETALA 2-like(LOC106353677)	coding protein	psRNATarget
XM_013887071.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1339   CUGCAGCAUCAUCAGGAUUCU   1359 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106445506), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC106445506)	coding protein	psRNATarget
XM_013867509.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1371   CUGCAGCAUCAUCAGGAUUCU   1391 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106426778), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC106426778)	coding protein	psRNATarget
XM_013867508.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1375   CUGCAGCAUCAUCAGGAUUCU   1395 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106426778), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC106426778)	coding protein	psRNATarget
XM_013787956.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1373   CUGCAGCAUCAUCAGGAUUCU   1393 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC106348248)	coding protein	psRNATarget
XM_013787955.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1373   CUGCAGCAUCAUCAGGAUUCU   1393 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC106348248)	coding protein	psRNATarget
XM_013787954.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1376   CUGCAGCAUCAUCAGGAUUCU   1396 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC106348248)	coding protein	psRNATarget
XM_013787953.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1376   CUGCAGCAUCAUCAGGAUUCU   1396 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106348248), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC106348248)	coding protein	psRNATarget
XM_013852206.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1360   CUGCAGCAUCAUCAGGAUUCU   1380 Target Full Sequence	1.5	PREDICTED: Brassica napus floral homeotic protein APETALA 2-like (LOC106411443), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC106411443)	coding protein	psRNATarget
XM_013879462.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1348   CAGCAGCAUCAUCAGGAUUCU   1368 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106438341), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106438341)	coding protein	psRNATarget
XM_013879461.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1408   CAGCAGCAUCAUCAGGAUUCU   1428 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106438341), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106438341)	coding protein	psRNATarget
XM_013878360.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1391   CAGCAGCAUCAUCAGGAUUCU   1411 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106437467), mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106437467)	coding protein	psRNATarget
XM_013798423.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1484   CAGCAGCAUCAUCAGGAUUCU   1504 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358595), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106358595)	coding protein	psRNATarget
XM_013798426.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1484   CAGCAGCAUCAUCAGGAUUCU   1504 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358596), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106358596)	coding protein	psRNATarget
XM_013798425.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1530   CAGCAGCAUCAUCAGGAUUCU   1550 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358596), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106358596)	coding protein	psRNATarget
XM_013798422.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||| targets:1530   CAGCAGCAUCAUCAGGAUUCU   1550 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor RAP2-7-like (LOC106358595), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC106358595)	coding protein	psRNATarget
XM_013836531.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:167   UUGUAACAUCAUCAAGAUUCU   187 Target Full Sequence	2.0	PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396197), transcript variant X2, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396197)	coding protein	psRNATarget
XM_013836530.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:167   UUGUAACAUCAUCAAGAUUCU   187 Target Full Sequence	2.0	PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396197), transcript variant X1, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396197)	coding protein	psRNATarget
XM_013892868.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:184   UUGUAACAUCAUCAAGAUUCU   204 Target Full Sequence	2.0	PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106451018), transcript variant X1, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106451018)	coding protein	psRNATarget
XM_013836554.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:190   UUGUAACAUCAUCAAGAUUCU   210 Target Full Sequence	2.0	PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396217), transcript variant X1, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396217)	coding protein	psRNATarget
XM_013892869.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:183   UUGUAACAUCAUCAAGAUUCU   203 Target Full Sequence	2.0	PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106451018), transcript variant X2, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106451018)	coding protein	psRNATarget
XM_013836556.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*||||||||||||||| targets:189   UUGUAACAUCAUCAAGAUUCU   209 Target Full Sequence	2.0	PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC106396217), transcript variant X2, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC106396217)	coding protein	psRNATarget
XM_013853169.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1074   UUGCAGCAUCAUCAGGAUUCC   1094 Target Full Sequence	2.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor SMZ (LOC106412263), mRNA	AP2-like ethylene-responsive transcription factor SMZ(LOC106412263)	coding protein	psRNATarget
XM_013881405.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1119   UUGCAGCAUCAUCAGGAUUCC   1139 Target Full Sequence	2.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor SMZ (LOC106439870), mRNA	AP2-like ethylene-responsive transcription factor SMZ(LOC106439870)	coding protein	psRNATarget
XM_013830781.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||*|||||||||=|||||| targets:1318   CUGCUGCAUCAUCAGGAUUCU   1338 Target Full Sequence	2.5	PREDICTED: Brassica napus AP2-like ethylene-responsive transcription factor TOE3 (LOC106390339), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC106390339)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).