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BaseInfo

ncRNA ID	bna-miR395d
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189385:85486-85602 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	90 - CUGAAGUGUUUGGGGGGACUC - 110
Stem-loop(if miRNA)	CC             UU         U   -GAU   --------U    UC       UU GC  CCAUGAGUUCCCU  AACGCUUCA UGU    UAC         CCAG  ACAUUUA  U ||  |||||||||||||  ||||||||| |||    |||         ||||  |||||||  U CG  GGUGCUCAGGGGG  UUGUGAAGU ACA    AUG         GGUU  UGUAAAU  U   -U             GU         C   ACAU   UUUUUAGCU    --       UC
Stem-loop sequence	GCCCCCAUGAGUUCCCUUUAACGCUUCAUUGUGAUUACUCCAGUCACAUUUAUUUUUCUUAAAUGUUUGGUCGAUUUUUGUAUACAACACUGAAGUGUUUGGGGGGACUCGUGGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013888737.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1095   GAGUGCCUCCAAACACUUCAG   1115 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106446918 (LOC106446918), mRNA	uncharacterized LOC106446918(LOC106446918)	coding protein	psRNATarget
FJ626850.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:338   GAGUUCCUCCAAACACUUCAU   358 Target Full Sequence	3.0	Brassica napus ATP sulfurylase 4 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001315829.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:338   GAGUUCCUCCAAACACUUCAU   358 Target Full Sequence	3.0	Brassica napus ATP sulfurylase 4, chloroplastic (LOC106410303), mRNA	ATP sulfurylase 4, chloroplastic(LOC106410303)	coding protein	psRNATarget
NM_001315588.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:107   AAGUUCUCCCAAACACUUCAA   127 Target Full Sequence	3.0	Brassica napus sulfate transporter 2.1 (LOC106383119), mRNA	sulfate transporter 2.1(LOC106383119)	coding protein	psRNATarget
FJ471539.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:107   AAGUUCUCCCAAACACUUCAA   127 Target Full Sequence	3.0	Brassica napus low affinity sulfate transporter Bnst2-1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_013859223.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:109   AAGUUCUCCCAAACACUUCAA   129 Target Full Sequence	3.0	PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106418501), mRNA	sulfate transporter 2.1-like(LOC106418501)	coding protein	psRNATarget
XM_013812709.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:129   AAGUUCUCCCAAACACUUCAA   149 Target Full Sequence	3.0	PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106372486), mRNA	sulfate transporter 2.1-like(LOC106372486)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).