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BaseInfo

ncRNA ID	bna-miR6030
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189357:62324-62436 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - UCCACCCAUACCAUACAGACCC - 32
Stem-loop(if miRNA)	UCA         U         -      CU   U   CA  A        UUUAC    GGGAUUAAG GUCUGUAUG UGUGGG  GAG AGG  CA UCACAGCU     U    ||||||||| ||||||||| ||||||  ||| |||  || ||||||||     C    UCCUAAUUC CAGACAUAC AUACCC  CUC UCC  GU AGUGUUGG     A -AG         C         C      AC   U   AG  A        UCUAG
Stem-loop sequence	UCAGGGAUUAAGUGUCUGUAUGUGUGGGCUGAGUAGGCACAAUCACAGCUUUUACUCAGAUCUGGUUGUGAAUGGACCUUCUCCACCCAUACCAUACAGACCCUUAAUCCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013831416.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   ||||=||||||||||||||||| targets:625   GGGUUUGUAUGGUAUGGGUGGA   646 Target Full Sequence	1.0	PREDICTED: Brassica napus probable disease resistance protein At1g12280 (LOC106390875), mRNA	probable disease resistance protein At1g12280(LOC106390875)	coding protein	psRNATarget
XM_013853054.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   *||||||||||||||||||||= targets:740   AGGUCUGUAUGGUAUGGGUGGG   761 Target Full Sequence	1.0	PREDICTED: Brassica napus disease resistance protein RFL1-like (LOC106412162), mRNA	disease resistance protein RFL1-like(LOC106412162)	coding protein	psRNATarget
XM_013886973.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   ||||||**|||||||||||||| targets:561   GGGUCUCCAUGGUAUGGGUGGA   582 Target Full Sequence	2.0	PREDICTED: Brassica napus putative disease resistance protein At1g63350 (LOC106445418), mRNA	putative disease resistance protein At1g63350(LOC106445418)	coding protein	psRNATarget
XM_013887544.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   |||*||*||||||||||||||| targets:580   GGGGCUUUAUGGUAUGGGUGGA   601 Target Full Sequence	2.0	PREDICTED: Brassica napus putative disease resistance protein At4g10780 (LOC106445902), mRNA	putative disease resistance protein At4g10780(LOC106445902)	coding protein	psRNATarget
XM_013816300.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   *||||||*|||||||||||||* targets:598   AGGUCUGCAUGGUAUGGGUGGU   619 Target Full Sequence	2.0	PREDICTED: Brassica napus disease resistance protein RFL1-like (LOC106376234), mRNA	disease resistance protein RFL1-like(LOC106376234)	coding protein	psRNATarget
XM_013853384.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   ||||||*||*|||||||||||| targets:562   GGGUCUAUACGGUAUGGGUGGA   583 Target Full Sequence	2.5	PREDICTED: Brassica napus probable disease resistance protein At1g12290 (LOC106412468), mRNA	probable disease resistance protein At1g12290(LOC106412468)	coding protein	psRNATarget
XM_013842820.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   *|*|||||*||||||||*|||| targets:828   CGCUCUGUUUGGUAUGGCUGGA   849 Target Full Sequence	2.5	PREDICTED: Brassica napus TLC domain-containing protein 2-like (LOC106402145), mRNA	TLC domain-containing protein 2-like(LOC106402145)	coding protein	psRNATarget
XM_013786917.1	ncRNA:22   CCCAGACAUACCAUACCCACCU   1   *|*|||||*||||||||*|||| targets:859   CGCUCUGUUUGGUAUGGCUGGA   880 Target Full Sequence	2.5	PREDICTED: Brassica napus TLC domain-containing protein 2-like (LOC106347389), mRNA	TLC domain-containing protein 2-like(LOC106347389)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).