Search result

BaseInfo

ncRNA ID	bna-miR169k
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189356:6626-6780 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	22
Mature sequence(if miRNA)	101 - UAGCCAAGGAUGACUUGCCUGC - 122
Stem-loop(if miRNA)	AAAC GUGACAUGAAGAAUGAGAAGUUGUGUGGUAGCCAAGGAUGACUUGCCUGCGUCUUAACACCAUAUCACAGA     G                                                                       C     |                                                                       U     A                                                                       U CUUU CUCCUCUUUCUCCUCACAGACUUAUCGGCUCCUCUGACGGAUGUCGGAUUGGUUGAGUCUCUGAUAGCUAU
Stem-loop sequence	AAACGGUGACAUGAAGAAUGAGAAGUUGUGUGGUAGCCAAGGAUGACUUGCCUGCGUCUUAACACCAUAUCACAGACUUUAUCGAUAGUCUCUGAGUUGGUUAGGCUGUAGGCAGUCUCCUCGGCUAUUCAGACACUCCUCUUUCUCCUCAUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013872447.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:893   AAGGGGAAGUCAUCCUUGGCUA   914 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106431642)	coding protein	psRNATarget
XM_013872446.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:896   AAGGGGAAGUCAUCCUUGGCUA   917 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106431642)	coding protein	psRNATarget
XM_013846894.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1275   AAGGGGAAGUCAUCCUUGGCUA   1296 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406270), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106406270)	coding protein	psRNATarget
XM_013843696.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1279   AAGGGGAAGUCAUCCUUGGCUA   1300 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106402883)	coding protein	psRNATarget
XM_013840111.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1287   AGGGGGAAGUCAUCCUUGGCUA   1308 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106399653), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106399653)	coding protein	psRNATarget
XM_013837663.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1288   AGGGGGAAGUCAUCCUUGGCUA   1309 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106397102), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106397102)	coding protein	psRNATarget
XM_013821179.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1275   CGGGGGAAGUCAUCCUUGGCUA   1296 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013846895.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1222   AAGGGGAAGUCAUCCUUGGCUA   1243 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406271), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106406271)	coding protein	psRNATarget
XM_013821178.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1294   CGGGGGAAGUCAUCCUUGGCUA   1315 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013843695.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1312   AAGGGGAAGUCAUCCUUGGCUA   1333 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106402883)	coding protein	psRNATarget
XM_013794135.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1313   AAGGGGAAGUCAUCCUUGGCUA   1334 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106354243), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106354243)	coding protein	psRNATarget
XM_013843873.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1376   AAGGGGAAGUCAUCCUUGGCUA   1397 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106403032)	coding protein	psRNATarget
XM_013843872.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1384   AAGGGGAAGUCAUCCUUGGCUA   1405 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106403032)	coding protein	psRNATarget
XM_013821177.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1389   CGGGGGAAGUCAUCCUUGGCUA   1410 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013821176.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1401   CGGGGGAAGUCAUCCUUGGCUA   1422 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013821175.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1609   CGGGGGAAGUCAUCCUUGGCUA   1630 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013817546.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   |*||**|||||||||||||||| targets:865   GAAGAGAAGUCAUCCUUGGCUA   886 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106377333), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106377333)	coding protein	psRNATarget
XM_013817545.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   |*||**|||||||||||||||| targets:986   GAAGAGAAGUCAUCCUUGGCUA   1007 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106377333), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106377333)	coding protein	psRNATarget
XM_013819709.1	ncRNA:22   CGUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||*|||||||| targets:977   AAGGGGAAGUCAUACUUGGCUA   998 Target Full Sequence	2.5	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106379846), mRNA	nuclear transcription factor Y subunit A-5-like(LOC106379846)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).
2	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).