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BaseInfo

ncRNA ID	bna-miR390c
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189355:75822-75949 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	23 - AAGCUCAGGAGGGAUAGCGCC - 43
Stem-loop(if miRNA)	--UA      U      AA         G          A   CUCAUCACCAUUACU GCGUAG    GAGAAG AGCUGU  AGCUCAGGA GGAUAGCGCC UGA               A ||||||    |||||| ||||||  ||||||||| |||||||||| |||               U UGUAUU    UUCUUC UCGGUA  UUGAGUCCU CCUAUCGCGG UAA               A       UUCG      U      CC         A          -   UGUAUAUGUUUCUGU
Stem-loop sequence	GCGUAGUAGAGAAGUAGCUGUAAAGCUCAGGAGGGAUAGCGCCAUGACUCAUCACCAUUACUAUAUGUCUUUGUAUAUGUAAUGGCGCUAUCCAUCCUGAGUUCCAUGGCUUCUUCUUGCUUUUAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013810883.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X3, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget
XM_013842905.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1567   AACGCUAACCCUCCUGAUCUU   1587 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106402213), mRNA	cytochrome P450 78A6-like(LOC106402213)	coding protein	psRNATarget
XM_013841739.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1567   AACGCUAACCCUCCUGAUCUU   1587 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106401261), mRNA	cytochrome P450 78A6-like(LOC106401261)	coding protein	psRNATarget
XM_013810882.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X2, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget
XM_013810884.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X4, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget
XM_013810879.1	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1595   AACGCUAACCCUCCUGAUCUU   1615 Target Full Sequence	2.5	PREDICTED: Brassica napus cytochrome P450 78A6-like (LOC106370887), transcript variant X1, mRNA	cytochrome P450 78A6-like(LOC106370887)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).